Dear Warren,
Just to tell you the good news,
I have got version 0.80 installed and everything looks just great.
(I have got well-behaved water molecules flowing now)
I have to study the manual better to play with other functions now.
Thanks again for the great program.
Regards,
K.K.Liang
Dear Warren,
Thanks for the message and thanks for the pymol program.
It is one of the most interesting programs that I worked with.
I tried to make all of the atoms in the waters HETATM,
and after all of the records of the atoms, I put CONECT
for all of the water molecules.
In the Win version, I
On Sun, 26 May 2002 kkli...@gate.sinica.edu.tw wrote:
> Now the problem is, when I tried to load some of the PDB files
> into a movie, pymol will link the water molecules wrongly.
> Some oxygen atoms are linked to more than two hydrogens.
> What's more, I tested the data both on the Windows versi
Dear pymolers,
I have to study the outcome from our MD calculations on
a protein surrounded by about 1700 water molecules.
There are 12000 such PDB files, each for one specific moment of time.
Now the problem is, when I tried to load some of the PDB files
into a movie, pymol will link the water m
