Suzanne,
There isn't an easy way to do this, as far as I know. `pair_fit` can be
used to do a superposition based on an arbitrary alignment, but it is very
tedious to specify each aligned pair individually, and it's hard to modify
the alignment.
I've used NCBI's Cn3D program for detailed manual a
Haddock?
-Original Message-
From: Lapolla, Suzanne M (HSC) [mailto:suzanne-lapo...@ouhsc.edu]
Sent: Tuesday, 8 April 2014 7:12 a.m.
To: pymol-users@lists.sourceforge.net
Cc: thomas.hol...@schrodinger.com
Subject: Re: [PyMOL] manual superposition with pymol--and another question
This
This worked--thanks. I have another ? that may have been addressed previously
but do not know the answer. Is there a way to do an alignment (or maybe
docking is a better word) on two structures/selections and input a constraint
for that alignment? For example, i am working on generating a model
So whilst I'm picking your collective brains, how would I set up a
superimposition using say 4 different residues usingthe backbones or ca
atoms? ie two from each separate chain of the homodimer?
Thanks again
J
--
Joel Tyndall, PhD
Lecturer
National School of Pharmacy
University of Otago
PO
