[PyMOL] ccp4 map sigma setting

2013-02-20 Thread Yarrow Madrona
Hi, When I display ccp4 maps in pymol they look a bit larger than I am used to seeing in coot for a given sigma setting. Is it common for users to increase the sigma setting when displaying maps in pymol? -- Yarrow Madrona Graduate Student Molecular Biology and Biochemistry Dept. University

Re: [PyMOL] ccp4 map sigma setting

2013-02-20 Thread Nat Echols
On Wed, Feb 20, 2013 at 2:21 PM, Yarrow Madrona amadr...@uci.edu wrote: When I display ccp4 maps in pymol they look a bit larger than I am used to seeing in coot for a given sigma setting. Is it common for users to increase the sigma setting when displaying maps in pymol? Have you tried: set

Re: [PyMOL] ccp4 map sigma setting

2013-02-20 Thread Pete Meyer
Unless the values have changed since I last checked the documentations, by default pymol contours maps at 1.0 sigma and coot defaults to 1.5 sigma (for non-difference maps). Pete Yarrow Madrona wrote: Hi, When I display ccp4 maps in pymol they look a bit larger than I am used to seeing in