15-16 are the clipping distances
and 17 is the orthoscopic flag.
Cheers,
Carsten
-Original Message-
From: Christian Roth [mailto:christian.r...@bbz.uni-leipzig.de]
Sent: Friday, June 15, 2012 12:57 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] clipping planes
Dear
Dear all,
it is nice to set via mouse wheel the clipping. Is it possible to get this
values somewhere out of pymol that one could use the actual values in a
script? I find it a bit complicated and time consuming to play always a few
times with the values in a script, to find values which looks
>> -Original Message-
>> From: Sebastian Kruggel [mailto:krug...@chemie.uni-hamburg.de]
>> Sent: Thursday, August 19, 2010 7:04 AM
>> To: pymol-users@lists.sourceforge.net
>> Subject: [PyMOL] clipping single objects e.g. surfaces
>>
>> dear all,
>
; From: Sebastian Kruggel [mailto:krug...@chemie.uni-hamburg.de]
> Sent: Thursday, August 19, 2010 7:04 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] clipping single objects e.g. surfaces
>
> dear all,
>
> i just wondered if there is really no way to execute the
dear all,
i just wondered if there is really no way to execute the
clip-command for a single object. the online help and the
user guide only gives examples and advices for the hole
scene, seems i miss something really obvious... but i would
like to show a (whole) molecule but only parts of its
Hi Warren et al.,
I have been using Pymol for quite a while (years) and have not seen
documentation on these two questions. This is probably because I am still
using rc0.99, but I promise to switch to the $$ release as soon as my grant
comes in!
1st question: Is there a way to selectively cl
Robert Schwarzenbacher, PhD
The Joint Center for Structural Genomics
phone: 858 822 3637
Hi there,
Is there a way to define the clipping planes for only one object in a
scene.
For example I only want to clip the surface while not affecting residues
shown in stick.
Or alternatively is there a w
Is it possible to use povray to render a pymol scene with clipping planes?
Kevin Phillips
> I have one object showing the surface of a protein and another object showing
> a ligand inside the protein.
> Is it possible to use the clip command to define different clipping planes
> for the 2 objects.
> I want so "cut" the proteinsurface using clip, but the Ligand inside the
> protein sh
I have one object showing the surface of a protein and another object showing a
ligand inside the protein.
Is it possible to use the clip command to define different clipping planes for
the 2 objects.
I want so "cut" the proteinsurface using clip, but the Ligand inside the
protein should not be
I don't understand how these work at all. Is there any straightforward
way, given a structure's position and dimensions and the desired camera
position, to calculate the ideal position for the plane? How does
PyMOL decide where to put the planes? Right now I'm missing by a small
amount and at
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