Hi H. Adam -
Try the http://pymolwiki.org/index.php/Distancetoatom script by Andreas
Warnecke and use it to set b (or your own custom property in recent Incentive
PyMOL versions) based on the distance from a point.
Hope that helps.
Cheers,
Jared
--
Jared Sampson
Columbia University
On Mar 23
I have a pdb ‘xyz1’ and create a mapA, then create a surfA.
set surface_quality, 1
alter all, b=50
alter all, q=1
set gaussian_resolution,5
map_new mapA, gaussian, 1, sele or pdb, 6
isosurface surfA, mapA
I can then color that surfA with any solid color.
How can one color the surfA with a rainbo
Hi all,
To clearly state what Marius is intimating: we can calculate any
property of atoms and color the surface based on that property. His
example uses ELF. We created the surface from one map, and colored it
from another. While his application is very specific, PyMOL will
allow you to color
Hello
With help from Jason I've managed to solve my problem. As a result I've
updated the wiki page for the ramp_new command to include my particular case
(see bottom of the page)
http://pymolwiki.org/index.php/Ramp_New
Marius
On Mon, Jun 28, 2010 at 10:32 PM, Marius Retegan wrote:
> Hello,
> Ta
Hello,
Take the following scenario. I have two cube files, the first one holds some
values of a function (electron localization function),
while in the second cube for each value in the first cube file i can have
either one of the numbers from 0 to 6.
After loading the first cube file in Pymol, I c
