> This is awesome. It looks like this has been a valid setting
> for a *long* time, but I've never seen it. I look at a lot
> of MCSS-type structures, and I have some really painful
> scripts that get the bonds right once the structure is loaded
> in PyMOL. Now, I can just stamp the CONECT r
.@lists.sourceforge.net] On Behalf Of
Eric Zollars
Sent: Thursday, November 17, 2005 5:36 PM
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] displaying protein with propeptide
Is there a similar command to force PyMOL to use only CONECT
lines in the pdb file instead of generating connectivit
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Anne Mølgaard
> Sent: Friday, November 18, 2005 12:47 AM
> To: pymol-users@lists.sourceforge.net
> Subject: RE: [PyMOL] displaying protein with propeptide
>
> Thanks for the comments. The "retain_order"
mber 2005 02:28
To: Joel Tyndall; Anne Mølgaard; pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] displaying protein with propeptide
A quick fix is to use the "retain_order" setting.
set retain_order
which will force PyMOL to honor the order of ATOMs in the PDB file over the
numeric order
ceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Eric Zollars
> Sent: Thursday, November 17, 2005 5:36 PM
> To: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] displaying protein with propeptide
>
> Is there a similar command to force PyMOL to use
ard; pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] displaying protein with propeptide
Hi Ann,
I would change the chain id of the propeptide in a text
editor, to say P and remove the P from after the residue numbers.
J
Anne Mølgaard wrote:
Hi,
I am having problems displaying pro
.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Joel Tyndall
> Sent: Thursday, November 17, 2005 12:15 PM
> To: Anne Mølgaard; pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] displaying protein with propeptide
>
> Hi Ann,
>
> I would
Hi Ann,
I would change the chain id of the propeptide in a text editor, to say P
and remove the P from after the residue numbers.
J
Anne Mølgaard wrote:
Hi,
I am having problems displaying proteins with unusual residue numbering,
such as proteins with propeptides. An example is 1cs8, which
Hi,
I am having problems displaying proteins with unusual residue numbering,
such as proteins with propeptides. An example is 1cs8, which starts off like
this:
ATOM 1 N SER A 1P-32.762 23.978 22.929 0.00 34.26
N
ATOM 2 CA SER A 1P-32.360 24.645 21.660 0.00 34.08
