Hello Pymol users,
I am new to pymol scripting and I want to calculate the distance between two
points of all the pdb file in a directory.
I tried to write the script but seems its not working.
PLease help me.
from pymol import cmd
from glob import glob
lst = glob("*.pdb")
lst.sort()
for fil in
Hi pkb bioinfo (which I do hope is not your real name),
Did you actually paste the script or did you retype it?
> from pymol import cmd
> from glob import glob
>
> lst = glob("*.pdb")
> lst.sort()
>
> for fil in lst:
> cmd.load(fil,"tmp")
> dst=cmd.distance('/tmp//A/LYS`203/NZ','/
O, and just when I pressed send (which also made firefox crash for
some reason), it struck me that you only load files, which means that
you're only appending states. But you don't specify a state to
calculate the distance, which means the first is taken again and
again. You might want to add a lin
