Well, for me at least it is a good think Lina asked, because
there were two different answers from the experts and i learned from each.
I don't think we want to discourage or intimidate new users from
asking questions. It is very easy to ignore or delete a silly email.
Marius Retegan wrote:
> Dear
On Tue, Oct 11, 2011 at 8:13 PM, Francis E Reyes wrote:
> The column editing mode of vim will do this in a jiffy.
>
> Ctrl-V, select the column(s), hit D.
>
Thanks, very nice. I did not realize that the vim can choose block.
>
> F
>
> On Oct 11, 2011, at 1:59 AM, lina wrote:
>
> > Hi,
> >
> > I
Oops , c then type new text then esc-esc.
Haven't had my coffee yet.
F
On Oct 11, 2011, at 6:13 AM, Francis E Reyes wrote:
> The column editing mode of vim will do this in a jiffy.
>
> Ctrl-V, select the column(s), hit D.
>
> F
>
> On Oct 11, 2011, at 1:59 AM, lina wrote:
>
>> Hi,
>>
The column editing mode of vim will do this in a jiffy.
Ctrl-V, select the column(s), hit D.
F
On Oct 11, 2011, at 1:59 AM, lina wrote:
> Hi,
>
> I wish to change
>
> ATOM822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296
> H
> ATOM823 C12 PDB 1 34.14
On Tue, Oct 11, 2011 at 4:41 PM, Marius Retegan
wrote:
> Dear Lina,
>
> I don't want to be rude, but you should read this part of a document
> on how to ask questions on a mailing list
> http://catb.org/~esr/faqs/smart-questions.html#before.
> Some of the question that you posted on this mailing l
Dear Lina,
I don't want to be rude, but you should read this part of a document
on how to ask questions on a mailing list
http://catb.org/~esr/faqs/smart-questions.html#before.
Some of the question that you posted on this mailing list could have
been solved by a simple Google search.
Best regards
Hi Lina,
That's best done following Thomas' approach, but using chain="X" in
stead of segi=''
set pdb_retain_ids
load input.pdb
alter selection, chain='X'
save output.pdb
Cheers,
Tsjerk
On Tue, Oct 11, 2011 at 10:33 AM, lina wrote:
>
>
> On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder
> wrote
On Tue, Oct 11, 2011 at 4:24 PM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote:
>
>> Not really a Pymol question, is it?
>>
>
> well, it's the segment identifier column, so you can do with PyMOL:
>
> set pdb_retain_ids
> load input.pdb
> alt
On 10/11/2011 10:16 AM, Tsjerk Wassenaar wrote:
> Not really a Pymol question, is it?
well, it's the segment identifier column, so you can do with PyMOL:
set pdb_retain_ids
load input.pdb
alter all, segi=''
save output.pdb
Cheers,
Thomas
> On linux you can use sed:
>
> sed '/^\(ATOM\|HETA\)/
Hi Lina,
Not really a Pymol question, is it?
On linux you can use sed:
sed '/^\(ATOM\|HETA\)/s/^\(.\{72\}\)/\1/' filein.pdb > fileout.pdb
That means:
/^\(ATOM\|HETA\)/ :: Match lines starting with ATOM or with HETA, and
on those lines execute:
s/^\(.\{72\}\)/\1/ :: Subsitute the
Hi,
I wish to change
ATOM822 H01 PDB 1 32.103 36.531 -0.203 -0.11 0.02 .296
H
ATOM823 C12 PDB 1 34.140 35.147 -0.218 -0.18 -0.01 .122
C
to:
ATOM822 H01 PDB 1 32.103 36.531 -0.203 -0.11
0.02 H
ATOM823 C12 PDB 1
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