[PyMOL] movie: interpolate between different states

2011-05-18 Thread Nicolas Bock
Hi, can pymol interpolate between states in a movie? Suppose I have coordinates of a docking process with several states, and I would like to animate that process, but smoothly. I would madd 1 x15 madd 2 x15 . . . but would like pymol to interpolate in those 15 frames between state 1 and 2,

Re: [PyMOL] movie: interpolate between different states

2011-05-18 Thread Jason Vertrees
Hi Nick, You can use the smooth command (http://www.pymolwiki.org/index.php/Smooth) on the structure of choice. Incentive PyMOL comes with a molecular morpher called rigimol that morphs a starting structure into an ending structure. I suggest trying the smooth command first if you already have

Re: [PyMOL] movie: interpolate between different states

2011-05-18 Thread Nicolas Bock
Hi Jason, I have the incentive version, but how do I use rigimol? I can't find documentation for it on the documentation webpage. The link from http://pymol.org/dsc/dokuwiki/doku.php?id=ips=rigimol seems to be dead. Thanks, nick On 05/18/11 15:20, Jason Vertrees wrote: Hi Nick, You can