Hi Anasuya,
your "pdbid" variable actually holds the file name (including
extension), so the delete statement fails.
Fix it like this:
cmd.delete(pdbid.split('.')[0])
Cheers,
Thomas
Anasuya Dighe wrote, On 03/02/12 19:38:
> Hi,
> I am running this code on some pdb files: 12gs.pdb, 182l.p
Hi,
I am running this code on some pdb files: 12gs.pdb, 182l.pdb, 183l.pdb
CODE
from pymol import cmd
def process_line(x):
pdbid,res,chain,num = x.split()
cmd.load(pdbid)
cmd.select("target","(resn %s and chain %s and resi %s)"%(res,chain,num))
cmd.select("zone2","(br. (target expand
