Thank you, Bruno and Tsjerk. I found both approaches work very well.
Eric
Frankly, with Pymol, people don't as far as I know. What I usually do
is
determine for the first frame of the individual pdb files (obtained
with
trjconv -sep) the orientation, viewing point and appearance. This I
save
Hi Bruno,
Sure I'm aware of that, but for a bit of a system (as I usually have) and
a good bit of trajectory (as I usually have), that will ask for quite some
memory. Did it a few times, but prefer to use separate pdb's instead.
Though admitted that for small systems, a multistate pdb works great
Hello,
It's possible to convert to a single pdb file containing all the frames
using:
trjconv -f cpeptide_md.trr -o trajout.pdb -s cpeptide_md.tpr
You can then load it into pymol using:
pymol trajout.pdb
And it will load all the frames.
If you render a movie into png you will have lots of
Hi Yunfeng Hu,
Frankly, with Pymol, people don't as far as I know. What I usually do is
determine for the first frame of the individual pdb files (obtained with
trjconv -sep) the orientation, viewing point and appearance. This I save
in a .pml script. Then with a bit of python code, looping ov
Hi, I wonder if people can give a summary of how pymol makes movies out
of gromacs trr (or xtc) files without having to use all the individual
frame pdb files. Thanks!
Eric
