[PyMOL] selecting Na+ in pymol

2007-02-02 Thread Abhinav Verma
Hallo, I have an annoying problem. I have pdb file with Na+ atoms defined as ATOM 1 Na+ Na+53 -1.106 7.854 52.244 1.00 0.00 Na ATOM 2 Na+ Na+54 -0.106 3.854 27.244 1.00 0.00 Na ATOM 3 Na+ Na+55 1.894 -6.146 62.244 1.00 0.00 Na ATOM

Re: [PyMOL] selecting Na+ in pymol

2007-02-02 Thread Tsjerk Wassenaar
Hi Abhi, Actually, it was a bit surprising to me to see you're right. Now, for showing/hiding, it has been dealt with in the code, by allowing the "+" to be left out. However, for selecting (and alter_ing) that doesn't go, apparently. A workaround is to use cmd.select("selectionname","r. na\+")

Re: [PyMOL] selecting Na+ in pymol

2007-02-02 Thread DeLano Scientific
ge.net] On Behalf > Of Tsjerk Wassenaar > Sent: Friday, February 02, 2007 2:23 AM > To: Abhinav Verma > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] selecting Na+ in pymol > > Hi Abhi, > > Actually, it was a bit surprising to me to see you're

Re: [PyMOL] selecting Na+ in pymol

2007-02-02 Thread Tsjerk Wassenaar
t] On Behalf > Of Tsjerk Wassenaar > Sent: Friday, February 02, 2007 2:23 AM > To: Abhinav Verma > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] selecting Na+ in pymol > > Hi Abhi, > > Actually, it was a bit surprising to me to see you're right. > Now,

Re: [PyMOL] selecting Na+ in pymol

2007-02-04 Thread Abhinav Verma
om: pymol-users-boun...@lists.sourceforge.net > > [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf > > Of Tsjerk Wassenaar > > Sent: Friday, February 02, 2007 2:23 AM > > To: Abhinav Verma > > Cc: pymol-users@lists.sourceforge.net > > Subject: Re: [PyMOL] selec