Re: [PyMOL] surfaces and transparency

2005-03-17 Thread Paula Salgado
al message >Date: Wed, 16 Mar 2005 20:17:31 +0100 >From: Virgile ADAM >Subject: Re: [PyMOL] surfaces and transparency >To: pa...@strubi.ox.ac.uk, pymol-users@lists.sourceforge.net > > Dear Paula, > for smoothen rendering, you can use the "smooth", >

RE: [PyMOL] surfaces and transparency

2005-03-16 Thread Garcia, Tzintzuni I.
-Tzintzuni Garcia -Original Message- From: pymol-users-ad...@lists.sourceforge.net on behalf of Paula Salgado Sent: Wed 3/16/2005 9:35 AM To: pymol-users@lists.sourceforge.net Cc: Subject:[PyMOL] surfaces and transparency Hi, I'm a new pymol user and have been tryin

Re: [PyMOL] surfaces and transparency

2005-03-16 Thread Virgile ADAM
Dear Paula, for smoothen rendering, you can use the "smooth", "set ribbon_smooth"... commands or try to raytrace your molecule thanks to the "ray" command. Concerning transparency, there is no simple way to my knowledge to render transparency on some of the residues of a single loaded protein. Yo

[PyMOL] surfaces and transparency

2005-03-16 Thread Paula Salgado
Hi, I'm a new pymol user and have been trying to generate an image of a solvent-accessible surface in pymol. How can I smooth the surface representation? Another questions relates to transparency: is it possible to have bits of a protein transparent and others coloured? If so, how can you do it?