Hi there,
This works perfect. Indeed, I was wondering how to extract position data.
This is very useful.
Thanks a million!
On Tue, May 6, 2014 at 7:58 PM, Sampson, Jared jared.samp...@nyumc.orgwrote:
Hi Mary -
If you already know which state has the conformation you want to use for
your
Thanks a lot for the tip and explaining the whole thing, Jared. I learned a
lot from that. It worked but here is why I had a problem at the beginning
(and tried the command I emailed), still same problem persists.
I had tried similar command on one of the models after splitting the pdb
file
Hi Mary -
If you already know which state has the conformation you want to use for your
measurement, or if you want to create a pseudoatom for each state, you can do
so by passing the `state` keyword to pseudoatom:
set state, 1 # or 2, 3, etc.
pseudoatom test, pdbfile_0001 and chain A and
Hi Mary -
There are a couple problems here. First, you’re giving the pseudoatom command
a positional argument out-of-order (and after keyword parameters). Keyword
parameters can appear in any order, but only if you use the keyword.
Otherwise, you must list them in the order specified by the
Hi there,
I want to measure the distance and angle between an aromatic ring
(phenylalanin and a residue backbone) like this:
http://www.pymolwiki.org/index.php/File:Pseu1.png
I learned from here that I need to make a pseudoatom but I cannot make it
work.
I tried
pseudoatom test, resi=100,
