Hi Alison,
Can you provide a sample image of what you're talking about? Feel free
to email me directly and attach an image.
A quick suggestion would be to try Grid Mode, especially if you're
viewing surfaces of aligned proteins.
See http://www.pymolwiki.org/index.php/Grid_mode.
Cheers,
--
Hi there
I am fairly new to pymol and am currently using it to visualise
superpositions of 2 protein structures. However, I have noticed that a lot
of structural detail is lost in regions where the structures are very
similar and - instead of seeing two proteins nicely superimposed - I get
