ure how to continue.
http://www.pymolwiki.org/index.php/Color#Reassigning_B-Factors_and_Coloring
Regards,
-- Jason
On Tuesday 06 March 2007 09:03, pymol-users-requ...@lists.sourceforge.net
wrote:
> Message: 2
> Date: Tue, 6 Mar 2007 11:19:44 +0100
> From: "Gerebtzoff, Gregori
Marco,
Maybe you could replace (alter) the B-factor of your protein with the
electrostatic values, and color it accordingly; some googling should
give you more hints about how you could solve this issue, like
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/data2bfactor.py
and
http://pldserver
On 3/3/07, se...@uniroma2.it wrote:
Dear all,
I'm new to this list and to the software.
I used PyMOL and APBS to calculate an electrostatic surface for a
small protein (I'm using the WindowsXP version) and everything seems fine.
Now I would like to visualize this surface AND the secondary stru
Todd Geders said:
>Hello all,
>
>Here is a simple script that automates the electrostatic potential
>surface generation using Gromacs, MEAD, and Pymol for visualization.
>It's exclusively based off of the post by Esben Peter Friis:
>It requires you to massage your pdb file a bit, but it gets the
Hello all,
Here is a simple script that automates the electrostatic potential
surface generation using Gromacs, MEAD, and Pymol for visualization.
It's exclusively based off of the post by Esben Peter Friis:
http://sourceforge.net/mailarchive/forum.php?forum_id=60&max_rows=25&style=flat&viewmonth
Ruslan,
PyMOL can't yet calculate the electrostatic surface, but it can
display the potential as output by Grasp, Delphi, MEAD, or Zap.
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650
