Re: [PyMOL] PyMOL on the Mac

2010-03-16 Thread David Hall
I would be a fan of auto_show_cartoon. Also, if you set more than one of these, it will auto show more th one representation. Coolness. If anyone is curious, I just figured out what auto_show_selections appears to do (it is on by default), so I'll try to document that tomorrow. Thanks, -Dav

Re: [PyMOL] PyMOL on the Mac

2010-03-16 Thread Jason Vertrees
These settings affect the atomistic representations upon instantiation. So, keeping it simple and very fast is best. I might add a few more settings along these lines, but I don't think I'm going to make it totally generic. Here's another reason why I love PyMOL: 5 minutes of coding gets you a p

Re: [PyMOL] PyMOL on the Mac

2010-03-16 Thread Tsjerk Wassenaar
age- >> From: Tsjerk Wassenaar [mailto:tsje...@gmail.com] >> Sent: Tuesday, March 16, 2010 6:17 AM >> To: Jason Vertrees >> Cc: pymol-users@lists.sourceforge.net; David Hall >> Subject: Re: [PyMOL] PyMOL on the Mac >> >> Hi Jason, >> >> Alon

Re: [PyMOL] PyMOL on the Mac

2010-03-16 Thread David Hall
0 6:17 AM > To: Jason Vertrees > Cc: pymol-users@lists.sourceforge.net; David Hall > Subject: Re: [PyMOL] PyMOL on the Mac > > Hi Jason, > > Along those lines, would it be possible to have a 'default' which can > be set to a list of settings related to appearanc

Re: [PyMOL] PyMOL on the Mac

2010-03-16 Thread Gerebtzoff, Gregori
Subject: Re: [PyMOL] PyMOL on the Mac Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded,

Re: [PyMOL] PyMOL on the Mac

2010-03-15 Thread Tsjerk Wassenaar
Hi Jason, Along those lines, would it be possible to have a 'default' which can be set to a list of settings related to appearance? That might be more concise than to have everything in a separate setting. set default,[cartoon, lines, nonbonded, cbaw] The default value as pymol starts up now wou

Re: [PyMOL] PyMOL on the Mac

2010-03-15 Thread Jason Vertrees
David, You may remember writing: > A Pymol Quicklook plugin. My primary purpose would be for pses, but you > might as well pick up pdbs and other formats supported by pymol along the way. > For pdb files, I wouldn't want the default pymol view of lines colored by > atom with green carbons bein

Re: [PyMOL] PyMOL on the Mac

2010-01-23 Thread Florian Nachon
On 20 Jan 2010, at 22:07, Jason Vertrees wrote: > PyMOLers, > > I just want to quickly reiterate: PyMOL will still be supported on the > Mac--no need to worry. Even though other Schrodinger software doesn't > run on the Mac, PyMOL will. Actually, I expect that schrodinger will port their own s

Re: [PyMOL] PyMOL on the Mac

2010-01-21 Thread David Hall
Alright, here's a feature request that might convince people who still don't believe, despite your first commit to pymol trunk post-acquisition including "Fixed a GL build bug on OSX" (see http://pymol.svn.sourceforge.net/viewvc/pymol?view=rev&revision=3887 ) A Pymol Quicklook plugin. My prima