Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

2002-12-16 Thread Eugen Leitl
On Fri, 13 Dec 2002, Richard Gillilan wrote: > Even XML is very verbose for molecular data, but I haven't seen any > better way to write general objects to disk. Apropos CML and verbose, I'd like to cite a recent post from Peter Murray-Rust from svg-developers: Date: Sun, 15 Dec 2002 09:07:44 +

Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

2002-12-16 Thread Konrad Hinsen
> Yes, CORBA is complex and has some overhead. I have also read that > Microsoft's DCOM/OLE is very complex. I don't think either of > these is a good way to go, though there are some very cool applications > I have seen. A lab I know at LBL uses CORBA as a device interface. You can do nice thing

Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

2002-12-13 Thread Richard Gillilan
> Konrad Hinsen wrote: > > Indeed. But this illustrates nicely a frequent problem faced by > software designers: Software like OpenDX is powerful and flexible, but > also huge and difficult to learn. A small specialized tool is easier > to use for the specialized user. Of course those users then f

Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

2002-12-13 Thread Konrad Hinsen
> One of the reasons I have stuck with OpenDX (www.opendx.org) for > visualization for so long is the general (object-oriented) data > model. It has its limitations, but it has proven very powerful. > Users can define a wide variety of data in hierarchical forms. Indeed. But this illustrates nicel

Re: [PyMOL] improving interoperability between python moleculetoolkits

2002-12-12 Thread Richard Gillilan
Jules Jacobsen wrote: > ... stuff deleted > The core of this program is the data model in which each atom in a > molecule is defined. The next layer are the conversion scripts which take > the molecule data from the model and pipe them out to whatever format is > needed for the various data manipu