[Python-modules-team] Bug#969648: BD-Uninstallable Re: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
A bot wrote: Dependency installability problem for dask on all: dask build-depends on: - python3-pandas:amd64 (>= 0.19.0) dask build-depends on: - python3-distributed:amd64 python3-distributed depends on: - python3-dask:amd64 (>= 2.9.0) python3-pandas conflicts with: - python3-dask:amd64 (< 2.11

[Python-modules-team] Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
On 19/10/2020 20:07, Stefano Rivera wrote: Hi Rebecca (2020.10.19_11:51:33_-0700) Or maybe not an actual regression...it's a ~5e-7 difference and one of the things the patch does (at around dask/dataframe/tests/test_rolling.py:270) is _tighten_ the tolerance on that test. Hrm, I didn't see th

[Python-modules-team] Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
Or maybe not an actual regression...it's a ~5e-7 difference and one of the things the patch does (at around dask/dataframe/tests/test_rolling.py:270) is _tighten_ the tolerance on that test. I have filed a separate bug (#972516) for the fsspec issues. _

[Python-modules-team] Bug#972516: dask: fsspec API changes / new aiohttp dependency

2020-10-19 Thread Rebecca N. Palmer
Package: python3-dask Version: 2.11.0+dfsg-1 Some of fsspec's functionality now requires python3-aiohttp, including parts used in dask autopkgtests: https://ci.debian.net/data/autopkgtest/testing/amd64/d/dask/7549002/log.gz Some of these work if I add a test-dependency, but 2 continue to fail

[Python-modules-team] Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
ertionError diff -Nru dask-2.11.0+dfsg/debian/changelog dask-2.11.0+dfsg/debian/changelog --- dask-2.11.0+dfsg/debian/changelog 2020-02-26 21:01:52.0 + +++ dask-2.11.0+dfsg/debian/changelog 2020-10-19 08:38:20.0 +0100 @@ -1,3 +1,10 @@ +dask (2.11.0+dfsg-1.1) UNRELEASED; urgency=me

[Python-modules-team] Bug#969648: dask, pandas 1.1

2020-10-19 Thread Rebecca N. Palmer
The upstream patch doesn't even apply as-is; this version does, but I don't have time right now to actually test it. There's also a circular dependency problem, as dask indirectly build-depends on itself and my new pandas makes it uninstallable. Description: pandas 1.1 compatibility Origin:

[Python-modules-team] Bug#969648: python3.9, dask, pandas 1.1

2020-10-14 Thread Rebecca N. Palmer
Control: severity 969648 serious Control: tags 969650 pending Control: tags 972033 pending Python 3.9 related breakage has been declared RC, so if nobody objects, I intend to upload pandas 1.1 to unstable (possibly tonight, but it probably won't build before numpy and matplotlib are binNMUd fo

[Python-modules-team] Bug#959136: close this bug?

2020-10-13 Thread Rebecca N. Palmer
The linked upstream report says this went away in numpy 1.18.4, and the tests in question now pass on debci. ___ Python-modules-team mailing list Python-modules-team@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/pytho

[Python-modules-team] Bug#969648: python3.9 Re: dask, pandas 1.1

2020-10-11 Thread Rebecca N. Palmer
Control: block 972033 by 969650 This is now the only bug blocking pandas 1.1. Is there something wrong with the above fix, or have you just not had time to try it? Upgrading dask to a newer upstream version is also an option, but I haven't checked if it would break anything else. Python 3.

[Python-modules-team] Bug#969648: dask: autopkgtest fail with pandas 1.1 - datetime issues

2020-09-06 Thread Rebecca N. Palmer
Package: python3-dask Version: 2.11.0+dfsg-1 Tags: fixed-upstream With pandas 1.1.x from experimental, dask fails 8 of its tests, at least mostly datetime-related. Log: https://ci.debian.net/data/autopkgtest/unstable/amd64/d/dask/6900447/log.gz Upstream fix (untested): https://github.com/da

[Python-modules-team] Bug#950924: python-feather-format: FTBFS with pandas 1.0: test_boolean_object_nulls / test_sparse_dataframe fail

2020-08-24 Thread Rebecca N. Palmer
The patch still works for me (on amd64, dpkg-buildpackage in a chroot with experimental python3-pandas(-lib), sid everything else; keep the existing pandas025.patch). Anything obviously different about your test environment? ___ Python-modules-team

[Python-modules-team] Bug#959558: this fix breaks things

2020-05-30 Thread Rebecca N. Palmer
This fix causes Sphinx to fail if documenting an object whose __getattr__ fails, e.g. flask.request. This causes at least snakemake to FTBFS. Details and fix: https://github.com/sphinx-doc/sphinx/pull/7520 A workaround in failing packages is to add autodoc_default_options = {'exclude-members'

[Python-modules-team] Bug#950927: dask: autopkgtest fail with pandas 1.0

2020-02-09 Thread Rebecca N. Palmer
On 09/02/2020 16:29, Diane Trout wrote: Thanks for letting me know, I'll try working on it though i probably wont have much time until tuesday. Given the number of broken packages, it's likely to take longer than that anyway. Ubuntu freeze is on the 27th. Once I have a fixed build should

[Python-modules-team] Bug#950927: dask: autopkgtest fail with pandas 1.0

2020-02-08 Thread Rebecca N. Palmer
Source: dask Version: 2.8.1+dfsg-0.4 Control: tags -1 fixed-upstream Control: block 950430 by -1 With pandas 1.0 from experimental, dask builds but its autopkgtest fails. Upstream have several commits marked as related to pandas 1.0 compatibility: it looks like dask 2.10.1 is supposed to work w

[Python-modules-team] Bug#950924: python-feather-format: FTBFS with pandas 1.0: test_boolean_object_nulls / test_sparse_dataframe fail

2020-02-08 Thread Rebecca N. Palmer
Package: python3-feather-format Version: 0.3.1+dfsg1-3 Control: tags -1 patch Control: block 950430 by -1 Two tests fail with pandas 1.0 (from experimental): == ERROR: test_boolean_object_nulls (feather.tests.test_reader.TestFe

[Python-modules-team] Bug#942235: Adding Python 3.8 as a supported Python3 version

2019-11-18 Thread Rebecca N. Palmer
On 18/11/2019 07:07, Matthias Klose wrote: On 18.11.19 07:52, Alastair McKinstry wrote: So I've uploaded a python-xarray 0.14.0-2 which passes on python3.7. Its failing on python 3.8 but apparently due to pandas not ready on 3.8, so it should be ok to pass as the transition completes. I think

[Python-modules-team] Bug#942235: dask: autopkgtest needs update for new version of pytest

2019-11-14 Thread Rebecca N. Palmer
Ubuntu have dask 2.6.0 and fsspec, but still have a few autopkgtest failures: https://people.canonical.com/~ubuntu-archive/proposed-migration/update_excuses.html dask itself - looks like trying to use a nonexistent temporary directory pyfftw - looks like a test treating a new (unexpected) warni

[Python-modules-team] Bug#943925: patch - feather / pandas 0.25

2019-11-11 Thread Rebecca N. Palmer
0.25 Author: Rebecca N. Palmer Bug-Debian: https://bugs.debian.org/943925 Forwarded: not-needed (upstream have switched to pyarrow) --- python-feather-format-0.3.1+dfsg1.orig/feather/api.py +++ python-feather-format-0.3.1+dfsg1/feather/api.py @@ -15,6 +15,7 @@ import six from distutils.version

[Python-modules-team] Bug#943923: it no longer exists Re: please stop build-depending on python-pandas

2019-11-10 Thread Rebecca N. Palmer
Control: severity -1 serious python-pandas has now been removed, so these packages are now BD-Uninstallable. ___ Python-modules-team mailing list Python-modules-team@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/pyt

[Python-modules-team] Bug#943923: pandas needs 0.25 for Python 3.8

2019-11-07 Thread Rebecca N. Palmer
Control: severity -1 important Python 3.8 is being added to unstable's supported versions (#942106). As discussed in #931557, pandas in sid (0.23) doesn't support Python 3.8. pandas in experimental (0.25) does, but contains some API breaks and doesn't support Python 2, triggering these bugs.

[Python-modules-team] Bug#943925: python-feather-format: FTBFS with pandas 0.25

2019-10-31 Thread Rebecca N. Palmer
Package: python3-feather-format Version: 0.3.1+dfsg1-2 Control: block 931557 by -1 With python3-pandas 0.25, the build fails with these test failures: == ERROR: test_boolean_object_nulls (feather.tests.test_reader.TestFeatherR

[Python-modules-team] Bug#943923: python-apptools: please stop build-depending on python-pandas

2019-10-31 Thread Rebecca N. Palmer
+ + * Stop build-depending on python-pandas, +and fix resulting test issues. + + -- Rebecca N. Palmer Thu, 31 Oct 2019 21:42:13 + + python-apptools (4.4.0-3) unstable; urgency=medium * Fixing broken links in python-apptools-doc diff -Nru python-apptools-4.4.0/debian/control python-apptools

[Python-modules-team] Bug#942235: dask: autopkgtest needs update for new version of pytest

2019-10-28 Thread Rebecca N. Palmer
Assuming we're talking about https://salsa.debian.org/python-team/modules/dask/blob/experimental/debian/patches/use-local-intersphinx.patch I think the actual problem is on the numpy line: it adds the local inventory but doesn't remove the online one, so the tuple is too long. (I haven't actua

[Python-modules-team] Bug#901662: sphinx: RTD theme users FTBFS with dh_sphinxdoc: DOCUMENTATION_OPTIONS does not define URL_ROOT

2018-06-16 Thread Rebecca N. Palmer
Source: sphinx Version: 1.7.5-1 Severity: serious Control: tags -1 patch Control: affects -1 src:theano src:python-jira (These are the ones I've actually checked; I suspect most/all of the ~100 packages that build-depend on *-sphinx-rtd-theme are affected.) sphinx's included themes have layout.ht