[Python-modules-team] Bug#895226: FTBFS on amd64 in testing/unstable - a number of tests failures

2018-04-08 Thread Yaroslav Halchenko
Package: python-cffi Version: 1.11.5-1 Severity: serious Justification: fails to build from source (but built successfully in the past) testing/cffi0/test_verify.py ..s [ 35%] [ 39%] ..

[Python-modules-team] Bug#895055: ITP: python-sounddevice -- Python module to play and record sound

2018-04-06 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist Owner: Yaroslav Halchenko * Package name: python-sounddevice Version : 0.3.10 Upstream Author : Matthias Geier * URL : http://python-sounddevice.readthedocs.io/ * License : MIT/X Programming Lang: Python Description

[Python-modules-team] Bug#822766: Python3 binary for pyglet

2018-02-24 Thread Yaroslav Halchenko
On Sat, 24 Feb 2018, Rock Storm wrote: > What's the status of this issue? it is stable. contributions would be welcome(d) > Will it ever be a python3 binary package? yes > I fail to use the package 'python-pyglet' for a python3 application, I > keep getting the following error even though th

[Python-modules-team] Bug#887342: please update to pytest >= 3.3.0

2018-02-18 Thread Yaroslav Halchenko
Indeed, new releases are out and since 3.3.0 there is a new fixture (caplog) which an increasing number of projects start to use, so we would need an updated py.test to be able to package them (we run tests at build time) Cheers and thanks in advance -- Yaroslav O. Halchenko Center for Open Neur

Re: [Python-modules-team] Bug#868354: fresh upstream (2.7.4) is out and fixes a number of issues we need resolved

2017-07-14 Thread Yaroslav Halchenko
oh -- since package is now under DPMT, I guess I will just take care about updating it Cheers, On Fri, 14 Jul 2017, Yaroslav Halchenko wrote: > Source: python-whoosh > Version: 2.7.0-2 > Severity: normal > Thanks for packaging/maintaining whoosh! > We decided to use it for the

[Python-modules-team] Bug#868055: Bug#868055: virtualenv'ed python-dbg doesn't work smoothly with gdb (py- commands are gone)

2017-07-11 Thread Yaroslav Halchenko
On Tue, 11 Jul 2017, Yaroslav Halchenko wrote: > Package: python-virtualenv > Version: 15.1.0+ds-1 > Severity: normal > Not 100% sure if it is not a python-dbg or gdb issue, but I think it might as > well be virtualenv: > $> virtualenv --python=/usr/bin/python-dbg venv-dbg

[Python-modules-team] Bug#868055: virtualenv'ed python-dbg doesn't work smoothly with gdb (py- commands are gone)

2017-07-11 Thread Yaroslav Halchenko
Package: python-virtualenv Version: 15.1.0+ds-1 Severity: normal Not 100% sure if it is not a python-dbg or gdb issue, but I think it might as well be virtualenv: $> virtualenv --python=/usr/bin/python-dbg venv-dbg Running virtualenv with interpreter /usr/bin/python-dbg New python executable in /

[Python-modules-team] Bug#863215: fresh upstream (0.16.0) is available and asked for by some projects (nipype)

2017-05-23 Thread Yaroslav Halchenko
Package: python-future Version: 0.15.2-4 Severity: wishlist Would be great and appreciated -- System Information: Debian Release: 9.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug') Architecture: amd64 (x86_64) Foreign Archi

[Python-modules-team] Bug#857171: import of git can cause import failures of unrelated modules due to undefined variable

2017-03-08 Thread Yaroslav Halchenko
Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages python-git depends on: ii git [git-core] 1:2.11.0-2 ii git-core1:2.11.0-2 ii python-gitdb2.0.0-2 pn python:any python-git recommends no packages. Versions of packages python-git s

[Python-modules-team] Bug#851602: RFP: airspeed-velocity -- Python benchmarking tool with web-based reporting

2017-01-16 Thread Yaroslav Halchenko
Package: wnpp Severity: wishlist * Package name: airspeed-velocity Version : 0.2 Upstream Author : ASV Authors * URL : http://asv.readthedocs.io/, https://github.com/spacetelescope/asv * License : BSD-3 Programming Lang: Python Description : Python benc

[Python-modules-team] Bug#845178: FTBFS with super-fresh cython -- seems to carry pre-cythoned sources which get rebuilt during clean

2016-11-20 Thread Yaroslav Halchenko
Source: python-aiohttp Version: 1.1.5-1 Severity: serious Justification: fails to build from source (but built successfully in the past) While preparing for upload of fresh cython (0.25.2~b0-1) and running build of rdepends python-aiohttp failed to build with dh_auto_clean I: pybuild base:184: py

[Python-modules-team] Bug#844569: Bug#844569: ipython-notebook -> jupyter ?

2016-11-17 Thread Yaroslav Halchenko
On Wed, 16 Nov 2016, Sandro Tosi wrote: > On Wed, Nov 16, 2016 at 6:23 PM, Yaroslav Halchenko > wrote: > > Unfortunately it seems > > that python notebook support for jupyter is simply not present?! (thus > > marked > > at normal severity) > i'

[Python-modules-team] Bug#844569: ipython-notebook -> jupyter ?

2016-11-16 Thread Yaroslav Halchenko
Package: jupyter-core Version: 4.2.0-2 Severity: normal It might be that it is just the RTFM and that I was stuck using good old ipython-notebook for too long... but now that it is gone, I was expecting jupyter package(s) to provide a replacement/transition. Unfortunately it seems that python no

[Python-modules-team] Bug#838676: debcheckout -- warning: remote HEAD refers to nonexistent ref, unable to checkout.

2016-09-23 Thread Yaroslav Halchenko
Package: python-pyld Version: 0.6.8-1 Severity: minor $> debcheckout python-pyld declared git repository at git://anonscm.debian.org/python-modules/packages/python-pyld.git git clone git://anonscm.debian.org/python-modules/packages/python-pyld.git python-pyld ... Cloning into 'python-pyld'... r

[Python-modules-team] Bug#818745: SIGILL on mips in cephes_igam leading to FTBFS of pymvpa2

2016-03-20 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.17.0-1 Severity: important pymvpa2 package FTBFS on mips atm https://buildd.debian.org/status/fetch.php?pkg=pymvpa2&arch=mips&ver=2.4.3-1&stamp=1458051582 due to Program received signal SIGILL, Illegal instruction which if ran under gdb provides following detail:

[Python-modules-team] Bug#815326: FTBFS with newer cython due to untracked changes to the source

2016-02-20 Thread Yaroslav Halchenko
Source: python-aiohttp Version: 0.20.2-1 Severity: important I have uploaded fresh cython few days back 0.23.4+git4-g7eed8d8-1 and while testing reverse dependencies, saw that this package would now FTBFS due to ... 'build/scripts-3.4' does not exist -- can't clean it I: pybuild base:184: python3

[Python-modules-team] Bug#812623: new upstream (8.0.1) is avail but would need additional package python-keyring.alt

2016-01-25 Thread Yaroslav Halchenko
Package: python-keyring Version: 5.7.1-1 Severity: wishlist Just heads up that there is a new upstream, BUT to provide smooth upgrade new package would need to come to live to incorporate those backends which were moved away into https://github.com/jaraco/keyrings.alt / https://pypi.python.org/p

[Python-modules-team] Bug#795915: please upload 0.8.3 to unstable

2015-08-17 Thread Yaroslav Halchenko
Package: python-smmap Version: 0.8.3-1 Severity: normal fresh release/snapshot of python-git needs updated/fixed version, so it would be nice to see 0.8.3 in unstable to progress forward. -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (900, 'testing'), (600

Re: [Python-modules-team] update python-git (0.3.7 or 1.0.1)

2015-08-11 Thread Yaroslav Halchenko
On Tue, 11 Aug 2015, Yaroslav Halchenko wrote: > I will do it later today. Gitdb would need a kick then as well I guess gitdb uploaded to unstable python-git -- would like to get a closure on https://github.com/gitpython-developers/GitPython/issues/336 most probably will upload the curr

Re: [Python-modules-team] update python-git (0.3.7 or 1.0.1)

2015-08-11 Thread Yaroslav Halchenko
I will do it later today. Gitdb would need a kick then as well I guess On August 11, 2015 4:45:46 AM EDT, Hans-Christoph Steiner wrote: > >Hey all, > >I just checked GitPython (aka python-git) and there are newer upstream >releases available, so I wanted to check in on the status of updating >it

[Python-modules-team] Bug#793945: Bug#793945: pbr-1.3.0 in unstable?

2015-07-31 Thread Yaroslav Halchenko
> I have uploaded 0.11.0 in Sid. Great! Thanks! I will hold my breath until it appears in the archive ;) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist,Psychological and Brain Sciences Dept. Dartmouth College

[Python-modules-team] Bug#793945: Bug#793945: pbr-1.3.0 in unstable?

2015-07-30 Thread Yaroslav Halchenko
On Thu, 30 Jul 2015, Michael Fladischer wrote: > Hi Thomas, > it seems that there is one missing depeendency for python-mock-1.3.0 > still in experiamental: pbr-1.3.0 > Could you do an upload into unstable? as far as I have checked, situation is more tricky -- circular versioned depends: for

Re: [Python-modules-team] Backport of python-tornado/4.2.0-1 to jessie

2015-06-30 Thread Yaroslav Halchenko
On Tue, 30 Jun 2015, Sandro Tosi wrote: > Hello, > I will need kinda urgently (few days) to backport > python-tornado/4.2.0-1 to jessie, I can do it myself no problem, but > wanted to check with you if you prefer to handle it yourself or if > there's any problem if I do it. If you do -- I would

[Python-modules-team] Bug#757843: notes

2015-06-24 Thread Yaroslav Halchenko
upstream doesn't ship tests/ nor for w3lib, neither for scrapy. Dialog began: https://github.com/scrapy/w3lib/pull/34 scrapy needs testfixtures module, not in Debian, for quite a few tests (and jmespath which is in debian) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pym

[Python-modules-team] Bug#789606: new upstream release is available (1.0)

2015-06-22 Thread Yaroslav Halchenko
Package: python-scrapy Version: 0.24.2-1 Severity: wishlist Just to let you know. There was quite a bit of API changes http://doc.scrapy.org/en/1.0/news.html but I don't see any reverse-dependencies on scrapy, so should be not that painful whenever new version hits archive. -- System Information

[Python-modules-team] Bug#786897: pyglet 1.2 was finally released

2015-05-26 Thread Yaroslav Halchenko
Package: python-pyglet Version: 1.1.4.dfsg-2 Severity: normal Due to the age of 1.1.4 (from 2010) I am marking this as normal. 1.2 was released this Feb and we should upgrade unstable to it soonish! -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900, 'testing'),

[Python-modules-team] Bug#779035: Upstream is up to 4.1.0

2015-02-28 Thread Yaroslav Halchenko
Package: python-tornado Version: 3.2.2-1.1 Followup-For: Bug #779035 Fresh version of ipython 3.0 will require tornado >= 4.0 so fresh version would be well appreciated! thanks! -- System Information: Debian Release: 8.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (30

[Python-modules-team] Bug#777248: please update version of testtools (in experimental)

2015-02-06 Thread Yaroslav Halchenko
Package: python-testtools Version: 0.9.39-1 Severity: wishlist I just saw that some matchers definitions are not exposed (absent in __all__), so went upstream to see that was already fixed and that there is 1.5.0 release in Nov 2014. So it would be really neat to get fresh testtools into Debian pr

[Python-modules-team] Bug#769595: was about to upload

2014-12-18 Thread Yaroslav Halchenko
I was about to upload 0.3.2.1 into experimental but then decided to enable testing and found that some tests point to regressions etc, so decided to postpone. I will push though to svn the changes I have done so far see https://github.com/gitpython-developers/GitPython/issues/216 cheers -- Yar

[Python-modules-team] Bug#764307: 0.3 was released, and carries fix for #739898

2014-10-06 Thread Yaroslav Halchenko
Package: python-git Version: 0.3.2~RC1-3 Severity: wishlist Please update the package, or let me know if I should do as a team upload. Cheers! -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental') Architec

[Python-modules-team] Bug#739898: python-git: untracked_files no longer detected

2014-08-15 Thread Yaroslav Halchenko
Package: python-git Version: 0.3.2~RC1-3 Followup-For: Bug #739898 I am thinking about updating this package to current state of Git master from upstream. I have asked about possible RC2 but haven't got response so far: https://github.com/gitpython-developers/GitPython/issues/164 I would also ap

[Python-modules-team] Bug#757843: please enable build-time unit-testing

2014-08-11 Thread Yaroslav Halchenko
Package: python-scrapy Version: 0.24.2-1 Severity: wishlist it should help to guarantee correct operation using system-wide available versions of dependencees. Also it would help to install all necessary packages (from Debian) for testing of scrapy (via apt-get build-dep). Thanks in advance! --

[Python-modules-team] Bug#757842: new version (>= 1.8) is available and required for scrapy testing

2014-08-11 Thread Yaroslav Halchenko
Package: python-w3lib Version: 1.5-1 Severity: wishlist thanks in advance for updating the package! -- System Information: Debian Release: jessie/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures:

[Python-modules-team] uploaded patched matplotlib to 2-days delayed

2014-07-10 Thread Yaroslav Halchenko
Dear Julian, Sandro and the rest of the team. Only with a slight tune up to the current state of the matplotlib in team's SVN repository I have just uploaded to 2-days delayed, and then dcommitted to svn including the tag. Sandro, please let me know if I could reupload straight without any delay.

[Python-modules-team] Bug#733517: python-cffi Re: Bug#733517: FTBFS on Sparc and S390x

2014-07-07 Thread Yaroslav Halchenko
On Sat, 05 Jul 2014, Vincent Bernat wrote: > ❦ 4 mai 2014 09:15 +0200, Vincent Bernat  : > >> There is another problem on sparc that makes the build fail but it > >> succeeds on s390x. I still have to figure out the remaining bug on > >> sparc but it seems quite complex (and related to libffi)

[Python-modules-team] Bug#733517: Bug#733517: FTBFS on Sparc and S390x

2014-05-08 Thread Yaroslav Halchenko
On Wed, 29 Jan 2014, Vincent Bernat wrote: > > python-cffi unit tests are failing on sparc and s390x arch. You can > > find a patch to fix some of the problems here: > > > > https://bitbucket.org/cffi/cffi/commits/f3dabd52fbeb54e814e14120cb27ceae3ad266ce > > There is another problem on sparc th

[Python-modules-team] Bug#733286: wheel command listed as available but actually absent since there seems to be no wheel in Debian yet

2013-12-27 Thread Yaroslav Halchenko
Package: python-pip Version: 1.4.1-2 Severity: minor $> pip --help | grep wheel wheel Build wheels from your requirements. $> pip wheel ERROR: 'pip wheel' requires bdist_wheel from the 'wheel' distribution. $> acsearch pip wheel libpoe-component-dbiagent-perl - POE Compon

[Python-modules-team] Bug#724611: please run tests in 'verbose' mode to see which test is KNOWNFAIL or SKIPed

2013-09-25 Thread Yaroslav Halchenko
Package: python-numpy Version: 1:1.7.1-3 Severity: wishlist Just wanted to see if on s390x it is a known issue leading to http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=724047 but can only know that KNOWNFAIL=6, SKIP=5 on https://buildd.debian.org/status/fetch.php?pkg=python-numpy&arch=s390x&v

[Python-modules-team] Bug#719384: yade: FTBFS: AttributeError: 'NoneType' object has no attribute 'endswith'

2013-08-15 Thread Yaroslav Halchenko
Package: python-matplotlib Version: 1.3.0-1 Followup-For: Bug #719384 yes -- this is a very inconvenient bug since prevents clean and build operations on setup.py while $HOME is pointing to non-existing directory. As a workaround I am doomed now to mkdir -p $$HOME (which is $(CURDIR)/build) in th

[Python-modules-team] Bug#717100: oddly reports 1.8.0.dev version instead of 1.7.1

2013-07-16 Thread Yaroslav Halchenko
Package: python3-numpy Version: 1:1.7.1-2 Severity: minor $> python3 -c 'import numpy; print(numpy.__version__)' 1.8.0.dev-Unknown $> python -c 'import numpy; print(numpy.__version__)' 1.7.1 just confused me and others for a bit: https://github.com/pydata/pandas/issues/4263#issuecomment-210679

[Python-modules-team] Bug#716719: please upload bugfix 4.2.1 (will resolve FTBFS of upcoming pandas)

2013-07-11 Thread Yaroslav Halchenko
Package: python-bs4 Version: 4.2.0-2 Severity: normal was checking upcoming pandas release and ran into various tests failures... e.g. https://github.com/pydata/pandas/issues/4214 seems to be resolved if I upgrade (via seamless uupdate) to 4.2.1 which has following changelog = 4.2.1 (20130531) =

Re: [Python-modules-team] python-requests backport

2013-06-06 Thread Yaroslav Halchenko
> Hello Julien and Yaroslav, > thanks for remindig this: I was wondering about backporting requests but as > noted by Yaroslav we have to investigate how many packages will break. > On Wednesday 05 June 2013 08:30:55 Yaroslav Halchenko wrote: > > It would be nice to know if

Re: [Python-modules-team] python-requests backport

2013-06-05 Thread Yaroslav Halchenko
FWIW IIRC requests 1.x is not (fully) backward compatible with 0.12.x we have in wheezy. It would be nice to know if it would break any of the reverse dependencies if backport gets uploaded (may be add NEWS entry to make it obvious happen someone pull it from backports) $> apt-cache rdepends pyth

Re: [Python-modules-team] Bug#700994: NMU diff for python-numpy 1.6.2-1.2

2013-02-27 Thread Yaroslav Halchenko
"to mu or not to mu" FWIW: for mpi4py I decided to avoid hardcoding the suffix: diff --git a/debian/rules b/debian/rules index 0688ac2..54e761d 100755 --- a/debian/rules +++ b/debian/rules @@ -54,10 +54,14 @@ override_dh_install: done : # Python 3 + : # Can have python$$v symlin

[Python-modules-team] fix to pp into wheezy?

2013-01-23 Thread Yaroslav Halchenko
oke_via-m.patch parallelpython-1.6.2/debian/patches/30_ppworker_invoke_via-m.patch --- parallelpython-1.6.2/debian/patches/30_ppworker_invoke_via-m.patch 1969-12-31 19:00:00.0 -0500 +++ parallelpython-1.6.2/debian/patches/30_ppworker_invoke_via-m.patch 2013-01-22 13:29:31.0 -050

[Python-modules-team] Bug#620551: Bug#620551: Bug#620551: any resolution?

2013-01-22 Thread Yaroslav Halchenko
+parallelpython (1.6.2-2) unstable; urgency=low + + * Team upload + * Invoke ppworker via "python -m" avoiding addition of /usr/share/pyshared +to sys.path (Closes: #620551) + + -- Yaroslav Halchenko Tue, 22 Jan 2013 13:29:34 -0500 + parallelpython (1.6.2-1) unstable; urgency=l

[Python-modules-team] Bug#620551: Bug#620551: any resolution?

2013-01-22 Thread Yaroslav Halchenko
On Tue, 22 Jan 2013, Jakub Wilk wrote: > * Yaroslav Halchenko , 2013-01-22, 12:28: > >>One simple solution would be to run the script under the symlink > >>path /usr/lib/pymodules/python2.6/ppworker.py. > >>Then /usr/lib/pymodules/python2.6/ would be added (ag

[Python-modules-team] Bug#698716: new upstream is avail (1.6.3)

2013-01-22 Thread Yaroslav Halchenko
Package: python-pp Version: 1.6.2-2 Severity: wishlist subj... changelog: pp-1.6.3. 1) Added -P pid_file command line argument to ppserver.py 2) Modified print_stats() to output the number of active tasks. 3) Added SIGUSR1 handler to ppserver.py to print stats when signal is received

[Python-modules-team] any resolution?

2013-01-22 Thread Yaroslav Halchenko
Hi, > One simple solution would be to run the script under the symlink path > /usr/lib/pymodules/python2.6/ppworker.py. > Then /usr/lib/pymodules/python2.6/ would be added (again) to sys.path, > which is harmless. FWIW that would not help apparently since pp already does that: DEBUG4: ['/usr/b

[Python-modules-team] Bug#697704: Acknowledgement (%%cython magic -- mismatch between suffixes of the generated and expected .so due to multiarch)

2013-01-08 Thread Yaroslav Halchenko
A related wontfix bug report in Python itself for a generic resolution: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=682795 and in Cython internally this was already handled for inline compilation (now that I am starting to recollect this issue): http://mail.python.org/pipermail/cython-devel/2

[Python-modules-team] Bug#697704: %%cython magic -- mismatch between suffixes of the generated and expected .so due to multiarch

2013-01-08 Thread Yaroslav Halchenko
Package: ipython Version: 0.13.1-2 Severity: normal Trying an exemplar %%cython snippet from http://nbviewer.ipython.org/urls/raw.github.com/ipython/ipython/3607712653c66d63e0d7f13f073bde8c0f209ba8/docs/examples/notebooks/cython_extension.ipynb even with minimalistic example %%cython cimport cyth

[Python-modules-team] Bug#695955: Bug#695955: Bug#695955: fail upon failures in loops + do not ignore tests failures

2013-01-03 Thread Yaroslav Halchenko
On Thu, 03 Jan 2013, Sandro Tosi wrote: > thanks for your work to make numpy a better package :) thanks for maintaining this core package ;) > > - one assures that all for loops are secured with set -e, so if any > > command fails, the loop fails (do not remember who pointed me to this > > draw

[Python-modules-team] Bug#695955: fail upon failures in loops + do not ignore tests failures

2012-12-14 Thread Yaroslav Halchenko
nose 1.1.2-3 pn python-numpy-dbg ii python-numpy-doc 1:1.6.2-1 -- no debconf information >From 46bbfedb75f53f8f89ea749c60a4fc7c1ed75e3d Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Fri, 14 Dec 2012 13:10:34 -0500 Subject: [PATCH 1/2] debian/rules: safe-guard all for loop

[Python-modules-team] Bug#691251: python3.3 compatibility (No such file or directory: '/home/yoh/python-env/python3.3/bin/easy_install')

2012-10-23 Thread Yaroslav Halchenko
Package: python-virtualenv Version: 1.7.1.2-2 Severity: normal To check if indeed I have a fix #691244 I have tried to create python3.3 environment (using virtualenvwrapper but not sure if that is its fault -- please reassign if you are sure that it is): $> mkvirtualenv -p /usr/bin/python3.3 pyth

[Python-modules-team] Bug#691251: python3.3 compatibility (No such file or directory: '/home/yoh/python-env/python3.3/bin/easy_install')

2012-10-23 Thread Yaroslav Halchenko
On Tue, 23 Oct 2012, Matthias Klose wrote: > please note that python3.3 comes with its own pyvenv-3.3 how could I forget about those great news... 1. btw - could you share info on what 'm' is after in /usr/include/x86_64-linux-gnu/python3.3m ? 2. any hints on how to make nose work with 3.3 now

[Python-modules-team] Bug#691251: Bug#691251: python3.3 compatibility (No such file or directory: '/home/yoh/python-env/python3.3/bin/easy_install')

2012-10-23 Thread Yaroslav Halchenko
On Tue, 23 Oct 2012, Jakub Wilk wrote: > >? > It stands for "with pyMalloc". > See: http://www.python.org/dev/peps/pep-3149/#proposal Thank you Jakub! > >$> > >PYTHONPATH=/home/yoh/deb/gits/pkg-exppsy/mpi4py/install/lib/python3.3/site-packages/mpi4py > > $HOME/python-env/python3.3/bin/python3.3

Re: [Python-modules-team] fix to scipy into wheezy proposed-updates?

2012-08-31 Thread Yaroslav Halchenko
On Fri, 31 Aug 2012, Julien Cristau wrote: > > While building a squeeze backport of new release of python-brian package > > I just found out that there is a g++ 4.4 compatibility issue with weave > > of scipy shipped in squeeze. Fix is trivial -- I adopted it from a > > package in Ubuntu (links a

Re: [Python-modules-team] fix to scipy into wheezy proposed-updates?

2012-08-31 Thread Yaroslav Halchenko
fixed python-scipy/0.8.0-1 thanks On Fri, 31 Aug 2012, Adam D. Barratt wrote: > On Fri, 2012-08-31 at 11:53 -0400, Yaroslav Halchenko wrote: > > While building a squeeze backport of new release of python-brian package > > I just found out that there is a g++ 4.4 compatibility i

[Python-modules-team] fix to scipy into wheezy proposed-updates?

2012-08-31 Thread Yaroslav Halchenko
+++ python-scipy-0.7.2+dfsg1/debian/changelog 2012-08-31 09:54:37.0 -0400 @@ -1,3 +1,11 @@ +python-scipy (0.7.2+dfsg1-1+squeeze1) stable; urgency=low + + * Team upload. + * Patch weave-739.patch to include in blitz/*.h for weave inline +functionality (Closes: #686353) + + -- Yaroslav

[Python-modules-team] Bug#686353: weave incompatibilities with g++ 4.4

2012-08-31 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.7.2+dfsg1-1 Severity: important Tags: patch upstream While building backport packages of new python-brian release I ran into a known issue: /usr/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In static member function 'static long int blitz::_bz

[Python-modules-team] Bug#685509: Bug#685509: Bug#685508: Please add "XS-Testsuite: autopkgtest" header in debian/control

2012-08-21 Thread Yaroslav Halchenko
On Tue, 21 Aug 2012, Jakub Wilk wrote: > Control: tag -1 + wontfix > * Dmitry Shachnev , 2012-08-21, 17:10: > >>To allow test execution environments to discover packages which > >>provide tests, their source packages should have a `Testsuite:` > >>header containing `autopkgtest` (which is curren

[Python-modules-team] Bug#684107: Acknowledgement (package final release 1.7)

2012-08-06 Thread Yaroslav Halchenko
and here we go -- was my mistake of mixing up two patch sets. If upload of 1.7 official release to wheezy is impossible, please include the commit 9ebe087b8bbcdeee3051e07cacd05fa07436c16e (attached, thanks Satra once again for pointing it out) which resolves the FTBFS of nipype. Best regards, > u

[Python-modules-team] Bug#684107: Acknowledgement (package final release 1.7)

2012-08-06 Thread Yaroslav Halchenko
my reference to ,--- | e.g. I was just suggested that the fix for | https://networkx.lanl.gov/trac/ticket/737 | which was fixed right before 1.7 release might be the one causing hard to | reproduce (stopped failing for me again) FTBFS of nipype: | http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=6

[Python-modules-team] Bug#684107: package final release 1.7

2012-08-06 Thread Yaroslav Halchenko
Package: python-networkx Version: 1.7~rc1-2 Severity: normal It is unfortunate that upstream's release missed Debian freeze day by only few days, but may be at least (selected) fixes could be argued to propagate to wheezy? e.g. I was just suggested that the fix for https://networkx.lanl.gov/trac

[Python-modules-team] Bug#683131: pyamf: FTBFS with freshier releases of cython (i.e. 0.17.beta1 in experimental)

2012-07-28 Thread Yaroslav Halchenko
/usr/sbin:/usr/bin:/sbin:/bin:/usr/X11R6/bin" dpkg-buildpackage -us -uc -rfakeroot dpkg-buildpackage: source package pyamf dpkg-buildpackage: source version 0.6.1+dfsg-3 dpkg-buildpackage: source changed by Yaroslav Halchenko dpkg-source --before-build pyamf-0.6.1+dfsg dpkg-buildpackage:

[Python-modules-team] Bug#683108: Bug#683108: ipython: python3 shebangs

2012-07-28 Thread Yaroslav Halchenko
my guess is that it needs overrides for dh_python* calls like I did recently for cython: override_dh_python2: dh_python2 -pcython override_dh_python3: dh_python3 -pcython3 On Sat, 28 Jul 2012, Jakub Wilk wrote: > Package: ipython > Version: 0.13-1 > Severity: serious > If you rebuild

[Python-modules-team] Bug#682030: causes FTBFS of skimage on BE platforms: ValueError: matrix must have float64 values

2012-07-18 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.10.1+dfsg1-3 Severity: serious Tags: patch upstream Justification: fails to build from source (but built successfully in the past) I believe I have spotted it even before skimage FTBFSs: https://buildd.debian.org/status/package.php?p=skimage e.g. https://buildd.deb

Re: [Python-modules-team] Bug#679998: Acknowledgement (regression -- closes not-owned file handle upon numpy.load of .npz)

2012-07-18 Thread Yaroslav Halchenko
my PR to fix this bug in numpy was accepted (fix is tiny, accomplished with unittests): https://github.com/numpy/numpy/pull/328/files do you think it is worth adding this patch to debian package and seeking its acceptance to wheezy? -- Yaroslav O. Halchenko Postdoctoral Fellow, Department of

[Python-modules-team] Bug#681270: causes FTBFS of pymvpa2 on s390x: TypeError: Improper input parameters in leastsq call

2012-07-12 Thread Yaroslav Halchenko
On Thu, 12 Jul 2012, Denis Laxalde wrote: > >that was it -- assuring 'int' storage to be passed instead of npy_intp > >(which is long int on s390x and int on s390) resolves this issue... > Good to know. fitpack (interpolate) might also benefit from this. may be -- at least there were no gcc warnin

[Python-modules-team] Bug#681270: Bug#681270: causes FTBFS of pymvpa2 on s390x: TypeError: Improper input parameters in leastsq call

2012-07-12 Thread Yaroslav Halchenko
that was it -- assuring 'int' storage to be passed instead of npy_intp (which is long int on s390x and int on s390) resolves this issue... now I wonder what would be the cleanest patch ;-) (also running unittests with this fix to see how many tests get "fixed") On Thu, 1

[Python-modules-team] Bug#681270: causes FTBFS of pymvpa2 on s390x: TypeError: Improper input parameters in leastsq call

2012-07-12 Thread Yaroslav Halchenko
ee_2__dealloc__’: > scipy/spatial/ckdtree.c:3737:17: warning: cast from pointer to integer of > different size [-Wpointer-to-int-cast] On Thu, 12 Jul 2012, Denis Laxalde wrote: > tags 681270 -moreinfo > thanks > Yaroslav Halchenko wrote: > >BTW -- there is a bulk o

[Python-modules-team] Bug#681270: causes FTBFS of pymvpa2 on s390x: TypeError: Improper input parameters in leastsq call

2012-07-12 Thread Yaroslav Halchenko
On Thu, 12 Jul 2012, Denis Laxalde wrote: > >BTW -- there is a bulk of possibly related unittests failures on s390x (if > >only > >someone was brave enough to take care about > >http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=678546), e.g. (a piece > >of diff from output on s390)... > Ok, scip

[Python-modules-team] Bug#681270: causes FTBFS of pymvpa2 on s390x: TypeError: Improper input parameters in leastsq call

2012-07-11 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.10.1+dfsg1-3 Severity: serious Justification: fails to build from source (but built successfully in the past) Please see attached a somewhat minimalistic code to reproduce the problem. it fails only on s390x -- fine on s390 and any other architecture/port where py

[Python-modules-team] Bug#673987: Bug#673987: CVE-2012-2374

2012-07-09 Thread Yaroslav Halchenko
as http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=673987#10 described, version in squeeze (1.0.1) is not effected and no action should be done for current stable release. or am I missing the point here? On Mon, 09 Jul 2012, Jonathan Wiltshire wrote: > Dear maintainer, > Recently you fixed one

[Python-modules-team] Bug#679998: regression -- closes not-owned file handle upon numpy.load of .npz

2012-07-02 Thread Yaroslav Halchenko
-numpy suggests: ii gcc 4:4.7.1-1 ii gfortran 4:4.6.1-2 ii python-dev2.7.2-10 ii python-nose 1.1.2-3 ii python-numpy-dbg 1:1.6.2-1 ii python-numpy-doc 1:1.5.1-4 -- no debconf information >From 4df244465c3db3a8e9e624d17ed2982f595e2b8a Mon Sep 17 00:00:

Re: [Python-modules-team] Bug#679948: Acknowledgement (regression (fixed upstream) in deducing the dtype for record array)

2012-07-02 Thread Yaroslav Halchenko
ok -- bug bisected to be fixed in $> PYTHONPATH=$PWD python -c "import numpy; print numpy.__version__; print numpy.array([('a', 1), ('b', 9.99)])" 1.7.0.dev-91f87e1 [['a' '1'] ['b' '9.99']] but unfortunat

[Python-modules-team] Bug#679948: regression (fixed upstream) in deducing the dtype for record array

2012-07-02 Thread Yaroslav Halchenko
Package: python-numpy Version: 1:1.6.2-1 Severity: serious Tags: upstream I was troubleshooting pynn FTBFS http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=669466 and one of the recently failed unittests was due to following regression: $> python -c "import numpy; print numpy.__version__; print n

[Python-modules-team] Bug#678546: Run unittests at build-time

2012-06-22 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.10.1+dfsg1-3 Severity: wishlist While troubleshooting FTBFS of statsmodels on sparc we just ran into an issue which points to scipy (separate report will be filed whenever confirmed to be scipy-origin). I have looked at scipy build-log [1] and besides build-depend

[Python-modules-team] Bug#678036: Bug#678036: 1.7~rc1 causes FTBFS in nipype 0.5.3-1

2012-06-18 Thread Yaroslav Halchenko
I wonder if smth like this would work (didn't even look what the graph is): python -c "import pickle, networkx as nx; nx.to_scipy_sparse_matrix(pickle.load(open('/tmp/graph2debug.dat')))" and see attachment On Mon, 18 Jun 2012, Sandro Tosi wrote: > Hello, > can you please provide a minimal te

[Python-modules-team] Bug#678036: 1.7~rc1 causes FTBFS in nipype 0.5.3-1

2012-06-18 Thread Yaroslav Halchenko
Package: python-networkx Version: 1.7~rc1-1 Severity: serious I was about to upload a fix for #664944 but the build failed due to error while running unittests: == ERROR: Failure: ValueError (need more than 0 values to unpack) --

[Python-modules-team] Bug#653948: Bug#653948: marked as done (cephes_smirnov never returns on mips)

2012-05-14 Thread Yaroslav Halchenko
Hi Varun, thanks for taking care and adopting my patch. now it got accepted upstream and I wanted to mention that they refactored few other comparisons -- so it might be wise for Debian to adopt that patch as well (attaching). Cheers On Fri, 20 Apr 2012, Debian Bug Tracking System wrote: > You

[Python-modules-team] Bug#671802: please provide python-traits-dbg package with extensions built using python*-dbg

2012-05-06 Thread Yaroslav Halchenko
Package: python-traits Version: 4.0.0-1 Severity: wishlist some times things go wrong... and it absent builds of python-traits using python-dbg complicate not only troubleshooting bugs within traits extensions but in any app which depends on traits since absent ctraits.so built against python-dbg

[Python-modules-team] Bug#670970: Bug#670970: python3-numpy: broken symlinks with missing numpy

2012-04-30 Thread Yaroslav Halchenko
3.2/numpy ls: cannot access /usr/include/python3.2_d/numpy: No such file or directory ls: cannot access /usr/include/python3.2/numpy: No such file or directory -- =--= Keep in touch www.onerussian.c

[Python-modules-team] Bug#669272: Bug#669272: provide python3 package

2012-04-18 Thread Yaroslav Halchenko
roblems earlier than later; 2. prepare on Debian side for the upstream release ;-) -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.

[Python-modules-team] Bug#669272: provide python3 package

2012-04-18 Thread Yaroslav Halchenko
Package: python-matplotlib Version: 1.1.1~rc1-1 Severity: wishlist Now that python3-numpy is in sid, it would be great to get python3-matplotlib in since python3 is supported upstream AFAIK. -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (900, 'testing'), (

[Python-modules-team] numpy 1.6.1 into unstable?

2012-04-10 Thread Yaroslav Halchenko
it would be a good time to prepare for upcoming freeze assuring that dependent packages are in good shape... ? -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko

[Python-modules-team] Bug#653948: [SciPy-Dev] cephes_smirnov never returns on mips/sparc/...

2012-03-30 Thread Yaroslav Halchenko
d'oh -- now patch is attached On Fri, 30 Mar 2012, Yaroslav Halchenko wrote: > patch is attached here as well -- =--= Keep in touch www.onerussian.com Yaroslav H

[Python-modules-team] Bug#653948: [SciPy-Dev] cephes_smirnov never returns on mips/sparc/...

2012-03-30 Thread Yaroslav Halchenko
ing the same (1.0, nan, nan) as on x86 ... sent pull request https://github.com/scipy/scipy/pull/187 patch is attached here as well so next I guess is to make it return sensible values for the .fit as it did before? ;) On Fri, 30 Mar 2012, Yaroslav Halchenko wrote: > well -- imho it should ha

[Python-modules-team] Bug#663928: enable package build-time unittesting

2012-03-14 Thread Yaroslav Halchenko
Package: python-tornado Version: 2.1.0-2 Severity: wishlist haven't looked if they (tornado/test) require any internet access, but hopefully not e.g. for me atm tests stall at The file descriptor underlying a FileDescriptor may be closed and ... so it would be nice to iron them out -- System I

[Python-modules-team] Bug#662253: backtraces upon using XF86AudioRaiseVolume buttons: unichr() arg not in range(0x110000)

2012-03-04 Thread Yaroslav Halchenko
Package: python-pyglet Version: 1.1.4.dfsg-2 Severity: normal testing new version of psychopy which uses pyglet and just randomly pressed volume up buttong available on my thinkpad which generates following xev information: KeyPress event, serial 29, synthetic NO, window 0x781, root 0xb2,

[Python-modules-team] Bug#653948: cephes_smirnov never returns on mips

2012-01-01 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.9.0+dfsg1-1+b2 Severity: serious Justification: fails to build from source (but built successfully in the past) I have ran into this while building pymvpa2 packages. on mips and mipsel it times out. I have troubleshooted it on gabrielli and I believe the followi

[Python-modules-team] Bug#653262: "Fresh" upstream release 0.10.0 is available

2011-12-25 Thread Yaroslav Halchenko
Package: python-scipy Version: 0.9.0+dfsg1-1+b2 Severity: wishlist the beast is out! ;) -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.

Re: [Python-modules-team] [ftpmas...@ftp-master.debian.org: mathjax_1.1-1_amd64.changes ACCEPTED into unstable]

2011-11-21 Thread Yaroslav Halchenko
likely be rebased or > deleted at some point! The final product will end up in the team svn > when ready. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenk

[Python-modules-team] [ftpmas...@ftp-master.debian.org: mathjax_1.1-1_amd64.changes ACCEPTED into unstable]

2011-11-21 Thread Yaroslav Halchenko
Hi Fernando, Just FYI: Thanks to Julien we now have that optional piece for ipython notebooks available in Debian. NB mathjax is used for rendering latex symbols in upcoming release of ipython with notebooks. Without installed locally mathjax, which is somewhat heavy (125MB extracted) ipy

[Python-modules-team] welcome ipython01x* packages with notebooks for Debian systems

2011-09-30 Thread Yaroslav Halchenko
First of all I would like to express my apologies 1. to the maintainers of the official ipython package in Debian: $> zgrep '^ --' ~doc/ipython/changelog.Debian.gz | awk '{print $2, $3}' | sort | uniq -c | sort -nr 29 Norbert Tretkowski 10 Jack Moffitt 7 Bernd Zeimetz 5

Re: [Python-modules-team] ipython-0.11 -- VCS?

2011-09-29 Thread Yaroslav Halchenko
on.git > But I don't give no guarantees that it won't be rebase/deleted at some > point. -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko

[Python-modules-team] ipython-0.11 -- VCS?

2011-09-29 Thread Yaroslav Halchenko
Hi Julian and the Team, First of all thank you for all your work for maintaining ipython and making 0.11 available! I wonder -- why changes toward 0.11 are not in the SVN? may be ipython was migrated under some other VCS? (then vcs- fields should be adjusted in debian/control), or may be it wasn

[Python-modules-team] Bug#642785: Bug#642785: pyamf: FTBFS: Error compiling Cython file

2011-09-24 Thread Yaroslav Halchenko
with def method. > > warning: cpyamf/util.pyx:1121:4: Overriding cdef method with def method. > > make[1]: *** [override_dh_auto_build] Error 1 -- =------= Keep in touch

[Python-modules-team] preparing upload of python-tornado 2.1 -- advise on bup and gunicorn

2011-09-22 Thread Yaroslav Halchenko
-incompatible-changes http://www.tornadoweb.org/documentation/releases/v2.0.0.html I have tentative .deb's for testing, just didn't want to attach 200KB without your Ok ;) Cheers Yarik - Forwarded message from Yaroslav Halchenko - Date: Wed, 21 Sep 2011 19:25:09 -0400 From: Yaroslav

[Python-modules-team] Bug#636602: pushed few initial commits toward updated packaging

2011-09-21 Thread Yaroslav Halchenko
, -- =--= Keep in touch www.onerussian.com Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic ___ Python-modules-team mailing list Python-modules-team@lists.alioth.debian.org http

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