Looking at the source, 2.99 seems to fix the issue that the multipart to singlepart vector geometry tool does not preserve Z values for 3d geometries. 2.18.10 seems to still have this issue, at least 2.18.3 has it.
It turns out that it is straightforward to backport the 2.99 fix to 2.18, so I thought it may be useful to share the fix: After backing up the installed qgis/python/plugins/processing/algs/qgis/MultipartToSingleparts.py file, edit this file at the bottom (with notepad++ or emacs) and change the function extractAsSingle to (this much shorter) definition: def extractAsSingle(self, geom): print('multipart2single: use .asGeometryCollection') multiGeom = QgsGeometry() geometries = [] if geom.isMultipart(): multiGeom = geom.asGeometryCollection() for g in multiGeom: geometries.append(g) else: geometries.append(geom) return geometries .asGeometryCollection() preserves Z, while the original .as or .from methods do not. Also rename the corresponing MultipartToSinglePart.pyc and .pyo files to something else. Restart qgis and try it out. This is only tested on linux and with MultiPointZ but may work with other types as well. Good luck, Andreas PS: I did not submit this as a PR to the github repo since the issue seems already fixed and the strict requirements for a PR.
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