Re: [Rd] R CMD check warning message "print.check_code_usage_in_package"

2005-09-02 Thread Seth Falcon
On 2 Sep 2005, [EMAIL PROTECTED] wrote: > My SVN checkout of the r-devel sources seems to have it: > > $ grep print.check_code_usage_in_package * > QC.R:print.check_code_usage_in_package <- > > and it also seems to be in the r-devel .tar.gz from ETHZ. > > Are you sure you have a current version of

[Rd] R CMD check and interfacing packages

2005-09-02 Thread Gabor Grothendieck
For an R package whose purpose is to interface to other software, since such other software is not necessarily being on CRAN how does one proceed so that the R package can pass 'R CMD check'? None of the examples or demos in the package can run without the software being interfaced to. Is ther

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Peter Dalgaard
Martin Maechler <[EMAIL PROTECTED]> writes: > > "PD" == Peter Dalgaard <[EMAIL PROTECTED]> > > on 02 Sep 2005 18:48:24 +0200 writes: > > PD> "Milton Lopez" <[EMAIL PROTECTED]> writes: > > >> I appreciate the update. We will consider using Linux, > >> which leads me to one

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Thomas Lumley
On Fri, 2 Sep 2005, Martin Maechler wrote: >> "PD" == Peter Dalgaard <[EMAIL PROTECTED]> >> on 02 Sep 2005 18:48:24 +0200 writes: > >PD> "Milton Lopez" <[EMAIL PROTECTED]> writes: > >>> I appreciate the update. We will consider using Linux, >>> which leads me to one more qu

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Martin Maechler
> "PD" == Peter Dalgaard <[EMAIL PROTECTED]> > on 02 Sep 2005 18:48:24 +0200 writes: PD> "Milton Lopez" <[EMAIL PROTECTED]> writes: >> I appreciate the update. We will consider using Linux, >> which leads me to one more question: what is the maximum >> RAM that R can u

Re: [Rd] R CMD check warning message "print.check_code_usage_in_package"

2005-09-02 Thread Kurt Hornik
> Seth Falcon writes: > We're seeing many warnings like this: > Warning: S3 method 'print.check_code_usage_in_package' was declared in > NAMESPACE but not found > But the package's NAMESPACE does not contain such a declaration. > Seeing this in many Bioconductor packages when running R CMD ch

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Peter Dalgaard
"Milton Lopez" <[EMAIL PROTECTED]> writes: > I appreciate the update. We will consider using Linux, which leads me to > one more question: what is the maximum RAM that R can use on each > platform (Linux and Windows)? > > Thanks again for your prompt responses. On Win32, something like 3GB. Mayb

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Duncan Murdoch
On 9/2/2005 11:59 AM, Milton Lopez wrote: > I appreciate the update. We will consider using Linux, which leads me to > one more question: what is the maximum RAM that R can use on each > platform (Linux and Windows)? On 32 bit Windows, I believe the limit is normally 2 G total for all user proces

[Rd] R CMD check warning message "print.check_code_usage_in_package"

2005-09-02 Thread Seth Falcon
We're seeing many warnings like this: Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found But the package's NAMESPACE does not contain such a declaration. Seeing this in many Bioconductor packages when running R CMD check on Windows with R-devel built 1

Re: [Rd] 64 bit R for Windows

2005-09-02 Thread Milton Lopez
I appreciate the update. We will consider using Linux, which leads me to one more question: what is the maximum RAM that R can use on each platform (Linux and Windows)? Thanks again for your prompt responses. M. -Original Message- From: Luke Tierney [mailto:[EMAIL PROTECTED] Sent: Wedn

Re: [Rd] lattice and for loop

2005-09-02 Thread Roger D. Peng
See http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis-graphics-not-work_003f -roger Charles Geyer wrote: > - Forwarded message from Sandy Weisberg <[EMAIL PROTECTED]> - > > OK, here is my R bug: > > library(lattice) > x <- rnorm(20) > y <- rnorm(20) > z <-rep(c(1,

[Rd] lattice and for loop

2005-09-02 Thread Charles Geyer
- Forwarded message from Sandy Weisberg <[EMAIL PROTECTED]> - OK, here is my R bug: library(lattice) x <- rnorm(20) y <- rnorm(20) z <-rep(c(1,2),10) xyplot(y~x|z) # the above works fine. Now try this: for (j in 1:1) {xyplot(y~x|z)} # no graph is produced. -- Sanford Weisberg Univers

[Rd] Build R with ATLAS

2005-09-02 Thread Jennifer Lai
Hi, I followed this message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028942.html, to compile ATLAS with gcc and g77 on AMD Opteron. I then followed the instructions on this message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to convert static libraries

Re: [Rd] RFC: rawConnection (was "loop connections")

2005-09-02 Thread Duncan Murdoch
[EMAIL PROTECTED] wrote: > Duncan Murdoch <[EMAIL PROTECTED]> wrote: > > >>I think the cost of duplicating as.raw is worse than the cost of using >>extra memory. If the lack of symmetry bothers you, a solution is to >>require a raw object as input. > > > It wouldn't exactly be duplicating as