Re: [Rd] PR#9295

2006-10-16 Thread Daniel Platt
I'm glad I didn't see those comments -- ;-) Prof. Ripley also pointed out they weren't supposed to be macros. The -bexpall (actuall -Wl,-bexpall) produced an effect: now it complains about finding fortran libraries. gfortran was compiled with static libs on this system. It is complaining as w

Re: [Rd] error in lme4 for R 2.4.0 (PR#9297)

2006-10-16 Thread Douglas Bates
On 10/14/06, [EMAIL PROTECTED] <[EMAIL PROTECTED]> wrote: > Full_Name: Din Chen > Version: 2.4.0 > OS: Windows XP > Submission from: (NULL) (66.17.122.18) > > > I just updated the R.2.4.0. and got the error message for random effect > modelling, which was working on R.2.3.1. > > library(lme4) > mmo

Re: [Rd] PR#9295

2006-10-16 Thread Peter Dalgaard
[EMAIL PROTECTED] writes: > I asked a question that might help me track down what changed between > 2.3.1 that did build and the 2.4.0 version that will not build. Some of > the undefined names the linker was complaining about looked like #define > symbols that were not picked up by configure.

[Rd] Build question Re: PR#9295

2006-10-16 Thread Duncan Murdoch
On 10/16/2006 3:47 PM, [EMAIL PROTECTED] wrote: > I asked a question that might help me track down what changed between > 2.3.1 that did build and the 2.4.0 version that will not build. Actually, I think your message came through as a bug report, suggesting you were expecting someone else to f

[Rd] PR#9299:Re: Bugs with partial name matching during partial replacement (PR#9299)

2006-10-16 Thread Thomas Lumley
On Mon, 16 Oct 2006, [EMAIL PROTECTED] wrote: > This is a rather interesting, but I don't think it is a bug - it is > just things that "you are not supposed to do" It was a bug. It has been fixed in R 2.4.0. Unfortunately, since you didn't quote the PR# of the original bug in the subject line yo

[Rd] PR#9295

2006-10-16 Thread watplatt
I asked a question that might help me track down what changed between 2.3.1 that did build and the 2.4.0 version that will not build. Some of the undefined names the linker was complaining about looked like #define symbols that were not picked up by configure. The first thing I was hoping for

Re: [Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread Prof Brian Ripley
On Mon, 16 Oct 2006, Douglas Bates wrote: > I am encountering segfaults when checking the lme4 package on an > Athlon64 system if I use the acml blas. R was built as a 64-bit > application using the GCC 4.0.3 compiler suite including gfortran. > The version of acml is 3.5.0 gfortran64. gcc 4.1.1

Re: [Rd] OmegaHat and install packages menu

2006-10-16 Thread Duncan Murdoch
On 10/16/2006 11:09 AM, Gabor Grothendieck wrote: > On Windows, if I set the repositories to only Omegahat using > the > >Packages | Select repositories > > menu and then bring up the install packages menu: > >Packages | Install packages > > I find that several packages are listed twice

Re: [Rd] Bugs with partial name matching during partial replacement (PR#9202)

2006-10-16 Thread Hin-Tak Leung
This is a rather interesting, but I don't think it is a bug - it is just things that "you are not supposed to do"... you are assuming a certain evaluation order of the 4 "$" operators in " D$ABC[D$M] = D$V[D$M] " as in: temp1 <- D$M # 2nd and 4th temp2 <- D$V[temp1] # 3rd

Re: [Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread James W. MacDonald
I am not encountering segfaults either, using earlier versions of gcc/gfortran64 (4.0.0) and acml (3.0.0) on a 64 bit build of R-2.4.0 on Fedora Core 4 Best, Jim McGehee, Robert wrote: > I am not encountering segfaults on a 64-bit build of R 2.4.0 compiled > with gcc and g77 3.4.5 and ATLAS

Re: [Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread Simone Giannerini
I did not try the ACML but I have experienced problems both in configure and in make on my SUSE 10.0 x86_64 with gcc 4.0.2. The problem was due to a bug in gfortran so that I had to update to version 4.2 (I did not update gcc though). I do not know whether this may apply to you but updating the gfo

Re: [Rd] Bugs with partial name matching during partial replacement (PR#9299)

2006-10-16 Thread hin-tak . leung
This is a rather interesting, but I don't think it is a bug - it is just things that "you are not supposed to do"... you are assuming a certain evaluation order of the 4 "$" operators in " D$ABC[D$M] = D$V[D$M] " as in: temp1 <- D$M # 2nd and 4th temp2 <- D$V[temp1] # 3rd

[Rd] OmegaHat and install packages menu

2006-10-16 Thread Gabor Grothendieck
On Windows, if I set the repositories to only Omegahat using the Packages | Select repositories menu and then bring up the install packages menu: Packages | Install packages I find that several packages are listed twice. Why is that? I am using Windows XP: "R version 2.4.0 Patched (200

Re: [Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread McGehee, Robert
I am not encountering segfaults on a 64-bit build of R 2.4.0 compiled with gcc and g77 3.4.5 and ATLAS 3.6.0 on a Red Hat Athlon64 system. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Douglas Bates Sent: Monday, October 16, 2006 10:26 AM To: R Developme

[Rd] x86_64, acml-3.5.0-gfortran64 and lme4

2006-10-16 Thread Douglas Bates
I am encountering segfaults when checking the lme4 package on an Athlon64 system if I use the acml blas. R was built as a 64-bit application using the GCC 4.0.3 compiler suite including gfortran. The version of acml is 3.5.0 gfortran64. I do not encounter the segfaults when I compile R with R's b