Re: [Rd] slight anomaly in formals- ? (PR#9758)

2007-06-27 Thread ripley
On Tue, 26 Jun 2007, [EMAIL PROTECTED] wrote: Hi, The R input/output after the following paragraph is from a session with version.string R version 2.4.0 Patched (2006-11-23 r39958). Which is not recent, but this is unchanged since. The problem is the definition: `formals-` function (fun,

Re: [Rd] Bug in getVarCov.gls method (PR#9752)

2007-06-27 Thread ripley
Thank you, will be fixed in the next release of nlme (not yet scheduled, as everythign is code frozen for the release of R 2.5.1 tomorrow). On Tue, 26 Jun 2007, Andrzej Galecki wrote: Two attachments: 1. getVarCovBugReport.R - Rcode with an example illustrating the problem and how to fix

[Rd] inherits() and virtual classes

2007-06-27 Thread Robin Hankin
Hi How do I test for an object having a particular virtual class? In the following, onion is a virtual class, and octonion is a non-virtual class contained in onion. The last call to inherits() gives FALSE [R-2.5.0], when inherits.Rd led me to expect TRUE. setClass(onion,

Re: [Rd] inherits() and virtual classes

2007-06-27 Thread Prof Brian Ripley
inherits() is not to do with S4 classes: it tests inheritance in the base class system. See ?is in package 'methods'. is(jj, onion) [1] TRUE On Wed, 27 Jun 2007, Robin Hankin wrote: Hi How do I test for an object having a particular virtual class? In the following, onion is a virtual

Re: [Rd] Rmpi and OpenMPI ?

2007-06-27 Thread Dirk Eddelbuettel
On 27 June 2007 at 12:21, Markus Schmidberger wrote: | Hello, | | I found your discussion about Rmpi and openMpi at the R-devels archive. | | Did you managed to run Rmpi on openMPI (completely)? The good news is that a few of us have formed a new maintainaer team for OpenMPI in Debian. New and

Re: [Rd] trivial typo in ?ks.test (PR#9759)

2007-06-27 Thread ripley
Thanks, now fixed for 2.5.1. (BTW, convention has it that sending things as trivial as this to R-devel suffices. Now I must remember to close the PR ) On Tue, 26 Jun 2007, [EMAIL PROTECTED] wrote: In ?ks.test if the sample size if less than 100 in should be if the sample size is

[Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Petr Savicky
configure and make run OK, but make check failed for R version 2.5.1 RC (2007-06-26 r42068) on graphics with error: ## The following two examples use latin1 characters: these may not ## appear correctly (or be omitted entirely). plot(1:10, 1:10, main = text(...) examples\n~~,

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Prof Brian Ripley
But R 2.5.0 does the same, and as far as I know R has done so for many past versions. You are asking the impossible: outputting Latin-1 in a Latin-2 environment. Remember that postscript() does not handle UTF-8, and so uses whatever it thinks the local 8-bit encoding is, in your case either

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Peter Dalgaard
Prof Brian Ripley wrote: But R 2.5.0 does the same, and as far as I know R has done so for many past versions. You are asking the impossible: outputting Latin-1 in a Latin-2 environment. Remember that postscript() does not handle UTF-8, and so uses whatever it thinks the local 8-bit

[Rd] Rmpi and OpenMPI ?

2007-06-27 Thread Markus Schmidberger
Hello, I found your discussion about Rmpi and openMpi at the R-devels archive. Did you managed to run Rmpi on openMPI (completely)? We try to do this installation at a OS debian with the openmpi-common package, but it is not working. For example there is no mpi.h Thanks Markus --

Re: [Rd] make check for 2.5.1 RC fails on mbcsToSbcs in graphics

2007-06-27 Thread Prof Brian Ripley
On Wed, 27 Jun 2007, Peter Dalgaard wrote: Prof Brian Ripley wrote: But R 2.5.0 does the same, and as far as I know R has done so for many past versions. You are asking the impossible: outputting Latin-1 in a Latin-2 environment. Remember that postscript() does not handle UTF-8, and so

[Rd] possible bug in conflicts() (PR#9760)

2007-06-27 Thread rmh
# R for Windows will not send your bug report automatically. # Please copy the bug report (after finishing it) to # your favorite email program and send it to # # [EMAIL PROTECTED] # ## Dare I say the word: bug. It looks to me like a bug

[Rd] error message from lmer

2007-06-27 Thread Sebastian P. Luque
Hi, I've begun to use the lme4 package, rather than nlme, for more flexibility during modelling, and running the examples in lmer I receive this error message: --cut here---start- R (fm1 - lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) Error in

[Rd] rbind.data.frame changes

2007-06-27 Thread Mark.Bravington
Dear R-devel Pre-2.5.0, 'rbind.data.frame(x,y,...)' would set the class of each column to be the class of that column in 'x'. This has changed now, because 'rbind.data.frame' first deletes any zero-row arguments; so if 'x' is a zero-row DF, the classes will be set to those in 'y'. This breaks my

Re: [Rd] error message from lmer

2007-06-27 Thread Prof Brian Ripley
See the thread starting https://stat.ethz.ch/pipermail/r-devel/2007-June/046157.html https://stat.ethz.ch/pipermail/r-devel/2007-June/046160.html I can't reproduce this without knowing what is in your startup files: it should work with --vanilla, so please try that and try to eliminate