On 10/15/07, hadley wickham <[EMAIL PROTECTED]> wrote:
> On 10/15/07, Henrik Bengtsson <[EMAIL PROTECTED]> wrote:
> > [As agreed, CC:ing r-devel since others might be interested in this as
> > well.]
> >
> > Hi.
> >
> > On 10/15/07, Dirk Eddelbuettel <[EMAIL PROTECTED]> wrote:
> > >
> > > Hi Hadle
On 10/15/07, Henrik Bengtsson <[EMAIL PROTECTED]> wrote:
> [As agreed, CC:ing r-devel since others might be interested in this as well.]
>
> Hi.
>
> On 10/15/07, Dirk Eddelbuettel <[EMAIL PROTECTED]> wrote:
> >
> > Hi Hadley,
> >
> > On 15 October 2007 at 09:51, hadley wickham wrote:
> > | Would yo
> So given the help file, we should consider dropping the whole
> ``along the boxplot'' idea?
>
> {{well, yes, we should drop "traditional graphics" and work with
> grid-based graphical objects ("grob"s) that can be drawn
> vertically or horizontally,
> e.g., in lattice or (most probably) ggp
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On Mon, 2007-10-15 at 18:25 +0200, [EMAIL PROTECTED] wrote:
> > "JO" == Jari Oksanen <[EMAIL PROTECTED]>
> > on Mon, 15 Oct 2007 16:42:24 +0300 writes:
>
> JO> On Mon, 2007-10-15 at
Hi
I have been using a bit of namespaces in the past, but the following
alludes me.
I am dealing with the Bioconductor packages Biobase and affy. Biobase
has a namespace and affy does not. affy contains the S4 class
"AffyBatch" which extends the "eSet" class in Biobase.
I am extending the
I don't have 'genuine' windows, but I have been running win32 R
under wine from time to time for a couple of years (among other
reasons, for testing cross-compilation of our R package - snpMatrix in
http://www-gene.cimr.cam.ac.uk/clayton/software/), and your package
(fields_3.5.zip Geneland_2.0.8
> "JO" == Jari Oksanen <[EMAIL PROTECTED]>
> on Mon, 15 Oct 2007 16:42:24 +0300 writes:
JO> On Mon, 2007-10-15 at 15:25 +0200, [EMAIL PROTECTED] wrote:
>> > "ms" == marc schwartz <[EMAIL PROTECTED]>
>> > on Mon, 15 Oct 2007 14:20:16 +0200 (CEST) writes:
>>
BTW, this has come up several times before, e.g.
http://tolstoy.newcastle.edu.au/R/e2/help/07/08/22447.html
is a call for patches.
On Mon, 15 Oct 2007, Prof Brian Ripley wrote:
> On Mon, 15 Oct 2007, Thomas Yee wrote:
>
>> Hello,
>>
>> I was wondering if the functions deriv3(), deriv() etc. cou
I forgot to say that I was the package author.
I suspected a bug of R as Geneland worked fine for two
years and the problem popped up
with the release of R 2.6.0
And I can't see any explanation.
So, any clue would help.
gilles
> Gilles GUILLOT wrote:
>> Hi,
>> I experienced a problem with the pa
Gilles GUILLOT wrote:
> Hi,
> I experienced a problem with the package Geneland under R 2.6.0
> with windows XP professional.
>
> The commands below should simulate a dataset,
> then make an MCMC simulation stored in tempdir().
>
> It works with R 2.5.1 (both GUI and command line)
> It works wit
On Mon, 2007-10-15 at 15:25 +0200, [EMAIL PROTECTED] wrote:
> > "ms" == marc schwartz <[EMAIL PROTECTED]>
> > on Mon, 15 Oct 2007 14:20:16 +0200 (CEST) writes:
>
> ms> On Mon, 2007-10-15 at 10:30 +0200, [EMAIL PROTECTED] wrote:
> >> Full_Name: Bob O'Hara
> >> Version: 2.6.0
Hi,
I experienced a problem with the package Geneland under R 2.6.0
with windows XP professional.
The commands below should simulate a dataset,
then make an MCMC simulation stored in tempdir().
It works with R 2.5.1 (both GUI and command line)
It works with the command line of R 2.6.0
but not wi
> "ms" == marc schwartz <[EMAIL PROTECTED]>
> on Mon, 15 Oct 2007 14:20:16 +0200 (CEST) writes:
ms> On Mon, 2007-10-15 at 10:30 +0200, [EMAIL PROTECTED] wrote:
>> Full_Name: Bob O'Hara
>> Version: 2.6.0
>> OS: Windows XP
>> Submission from: (NULL) (88.112.20.250)
Dear R developers
I wrote a package whose computational 'engine' is programmed in Fortran 77.
However, I used also C code, mainly for exploiting the Mathlib Standalone
set of functions.
I successfully compiled and used my package for months, under R-2.4.1
(and MINGW - GCC 3.4.2).
Now, I switche
On Mon, 15 Oct 2007, Filipe Santos wrote:
> I just did a standard installation of R in my computer.
>
> What I was trying here is to call attention that Windows Vista doesn't allow
> normal users to write on the R default installation directory. Instead, the
> information about configuration files
On Mon, 2007-10-15 at 10:30 +0200, [EMAIL PROTECTED] wrote:
> Full_Name: Bob O'Hara
> Version: 2.6.0
> OS: Windows XP
> Submission from: (NULL) (88.112.20.250)
>
>
> Using horizontal=TRUE with boxplot() confuses it as to what is an x- or
> y-axis.
> At least, xlim= and ylim= are the wrong way r
If you are modifying it it would also be nice to add
{ to the derivative table so one can write this:
f <- function(x) x*x
deriv(body(f), "x", func = TRUE)
Currently, one must do:
deriv(body(f)[[2]], "x", func = TRUE)
On 10/15/07, Prof Brian Ripley <[EMAIL PROTECTED]> wrote:
> On M
Full_Name: Bob O'Hara
Version: 2.6.0
OS: Windows XP
Submission from: (NULL) (88.112.20.250)
Using horizontal=TRUE with boxplot() confuses it as to what is an x- or y-axis.
At least, xlim= and ylim= are the wrong way round, log="x" (or "y") and xaxt=
work as expected, I haven't looked at anything
I just did a standard installation of R in my computer.
What I was trying here is to call attention that Windows Vista doesn't allow
normal users to write on the R default installation directory. Instead, the
information about configuration files ( and in this case .RDataTmp )
shouldn't they be
The function runif(n) contains a protection against a corrupted .Random.seed.
Besides other things, it tests whether at least one of the numbers
.Random.seed[3:626] is not zero. If all(.Random.seed[3:626]==0), then
the internal Mersenne Twister state is regenerated using current time,
since a zero
On Mon, 15 Oct 2007, Thomas Yee wrote:
> Hello,
>
> I was wondering if the functions deriv3(), deriv() etc. could be extended
> to handle psigamma() and its special cases (digamma(), trigamma()
> etc.). From the error message it seems that 'psigamma' needs to be
> added to the derivatives table.
>
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