[Rd] read.table() causes segfault with incorrect data (PR#11627)

2008-06-11 Thread juho . vuori
Full_Name: Juho Vuori Version: 2.7.0 (2008-04-22) OS: Linux poseidon.fimr.fi 2.6.23.17-88.fc7PAE #1 SMP Thu May 15 00:22:53 EDT 2008 i686 i686 i386 GNU/Linux Submission from: (NULL) (193.166.188.194) Calling read.table() twice the following way causes a segmentation fault in R. Run R and type

[Rd] write.table (PR#11625)

2008-06-11 Thread jdowty
Hi,=20 =20 I am writing to suggest a change in write.table(). Currently one feature of this function is so counter-intuitive that it could be considered to be a bug. I use R 2.6.1 under Windows XP.=20=20 =20 When appending to a file, write.table() automatically writes the column names first,

Re: [Rd] Rmpi segfault after install on Ubuntu Hardy Heron

2008-06-11 Thread Dirk Eddelbuettel
On 11 June 2008 at 10:38, Sklyar, Oleg \(MI London\) wrote: | Does Rmpi work with OpenMPI at all? It calls lamboot on load from LAM Yes. | MPI. I would think that mpi_initialize calls a shared library function | from LAM MPI which simply does not exist in OpenMPI or which does | something

Re: [Rd] Posting Guide - help.request() function?

2008-06-11 Thread Dr Heather Turner
Okay, here's the update. I've created a new function create.post() (with Windows and Unix versions) which would be the internal function that creates the post template ready to edit and optionally send. In the Windows version I've added an experimental method == mailto option, which will open

Re: [Rd] Rmpi segfault after install on Ubuntu Hardy Heron

2008-06-11 Thread Paul Hewson
Hello, I can confirm that Rmpi 0.5.5 works fine with openmpi 1.1 But if (a) the cluster you are running on is set up to allow spawning and (b) you have lam-mpi installed, there is a function within zzz.R which will spawn a lam-mpi process as well which you might need to prevent. The package

Re: [Rd] Rmpi segfault after install on Ubuntu Hardy Heron

2008-06-11 Thread Dirk Eddelbuettel
On 11 June 2008 at 00:46, Mark Kimpel wrote: | I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and using the | following without errors: | R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi And it concluded without warnings or errors? Configure found all the

Re: [Rd] Posting Guide - help.request() function?

2008-06-11 Thread Martin Maechler
HT == Heather Turner [EMAIL PROTECTED] on Wed, 11 Jun 2008 12:50:49 +0100 writes: HT Okay, here's the update. HT I've created a new function create.post() (with Windows and Unix HT versions) which would be the internal function that creates the post HT template ready to

Re: [Rd] Makevars or congiure for multi platforms

2008-06-11 Thread Tadashi Kadowaki
Prof. Ripley, Which entries were you wanting to use? In this case, I would use the followings in Rconfig.h, then I don't have to add extra settings in congure.ac #define HAVE_ERRNO_H 1 #define HAVE_ICONV 1 #define HAVE_INTPTR_T 1 #define HAVE_UINTPTR_T 1 #define ICONV_LATIN1 1 #define

Re: [Rd] [ESS] browser() exits when not desired, in three different scenarios (PR#11634)

2008-06-11 Thread kw . statr
Tim, I have reported some similar issues a while back and there was some discussion on this topic: http://tolstoy.newcastle.edu.au/R/devel/06/03/4609.html Good luck, Kevin On Tue, Jun 10, 2008 at 6:47 PM, Tim Hesterberg [EMAIL PROTECTED] wrote: Here are three different scenarios in which the

[Rd] Routine and Deep testing with R CMD check

2008-06-11 Thread Kevin R. Coombes
Hi, I recently provoked some discussion over on the BioConductor developer list about testing and R CMD check. In brief, the salient points that arose from the discussion are: [1] Because of the need for a nightly build of BioConductor, the tests (in the ./tests directory) of a package that

Re: [Rd] Routine and Deep testing with R CMD check

2008-06-11 Thread Jeff Ryan
A combination of RUnit from CRAN and .Rbuildignore provide a workable solution for the 'xts' package I work on, though this obviously removes the tests from the distributed code. http://cran.r-project.org/web/packages/RUnit/index.html --and--

Re: [Rd] Routine and Deep testing with R CMD check

2008-06-11 Thread Bill Dunlap
On Wed, 11 Jun 2008, Kevin R. Coombes wrote: [1] Because of the need for a nightly build of BioConductor, the tests (in the ./tests directory) of a package that run routinely as part of R CMD check must complete in five minutes. [2] Nontrivial regression testing of complex algorithms on real

Re: [Rd] read.table() causes segfault with incorrect data (PR#11627)

2008-06-11 Thread Bill Dunlap
On Wed, 11 Jun 2008 [EMAIL PROTECTED] wrote: Full_Name: Juho Vuori Version: 2.7.0 (2008-04-22) OS: Linux poseidon.fimr.fi 2.6.23.17-88.fc7PAE #1 SMP Thu May 15 00:22:53 EDT 2008 i686 i686 i386 GNU/Linux Submission from: (NULL) (193.166.188.194) Calling read.table() twice the following

Re: [Rd] Routine and Deep testing with R CMD check

2008-06-11 Thread Prof Brian Ripley
On Wed, 11 Jun 2008, Bill Dunlap wrote: On Wed, 11 Jun 2008, Kevin R. Coombes wrote: [1] Because of the need for a nightly build of BioConductor, the tests (in the ./tests directory) of a package that run routinely as part of R CMD check must complete in five minutes. [2] Nontrivial

Re: [Rd] Routine and Deep testing with R CMD check

2008-06-11 Thread Bill Dunlap
On Wed, 11 Jun 2008, Prof Brian Ripley wrote: Bill Dunlap wrote: It might be nice if check could print the time it took to do each test. That's an existing request for various parts of the checking procedure. When the time to run a package check jumps up, it is sometimes tedious to find