Re: [Rd] MASS (and class, nnet, spatial) for R 2.10.0 ?

2009-10-15 Thread Peter Dalgaard
Dirk Eddelbuettel wrote: On 14 October 2009 at 18:54, Duncan Murdoch wrote: | On 14/10/2009 6:42 PM, Dirk Eddelbuettel wrote: | Maybe I missed an announcement somewhere but having started with the usual | practice of putting R pre-releases into Debian unstable leading up to the | release of

Re: [Rd] MASS (and class, nnet, spatial) for R 2.10.0 ?

2009-10-15 Thread Uwe Ligges
Peter Dalgaard wrote: Dirk Eddelbuettel wrote: On 14 October 2009 at 18:54, Duncan Murdoch wrote: | On 14/10/2009 6:42 PM, Dirk Eddelbuettel wrote: | Maybe I missed an announcement somewhere but having started with the usual | practice of putting R pre-releases into Debian unstable leading

Re: [Rd] MASS (and class, nnet, spatial) for R 2.10.0 ?

2009-10-15 Thread Peter Dalgaard
Uwe Ligges wrote: As I'm never quite sure what you're up to, I can't tell whether the issue is on your side or ours. There does seem to be some potential issues, both with dependency searches and with the effects of unbundling. (Do we, e.g., want a virtual VR package which just depends on

[Rd] typo in nlminb ?

2009-10-15 Thread Yohan Chalabi
Dear dev, it looks like there is a typo in nlminb. regards, Yohan Index: src/library/stats/R/nlminb.R === --- src/library/stats/R/nlminb.R(revision 50097) +++ src/library/stats/R/nlminb.R(working copy) @@ -93,7

Re: [Rd] Mac R spinning wheel with Package Manager (PR#14005)

2009-10-15 Thread james
Thanks Simon, I changed my mirror and the freeze on Get List reduced (although there was still a spinning pizza). Attempting an install definitely locked things up, but I can tell from my network activity that it was downloading and it did go ahead and install. Thanks, I suppose expected

[Rd] Can't locate R/Rdconv.pm in @INC

2009-10-15 Thread Grainne Kerr
Hi all, I've inherited in-house development package, which was developed on R v 2.6.1. I'm trying upgrade to R v 2.9.1. I have installed R from source, with a shared library and tcktk support. When installing myPkg, I use the following command: R CMD INSTALL myPkg * Installing to library

[Rd] news() format

2009-10-15 Thread Paul Gilbert
I am trying to reformat my NEWS file so it works with news() (in R-beta as of a few days ago). I have tried several variations around Changes in version 2009.10-1 o Standardized NEWS format for function news(). o Fixed a few documentation problems found by R-2.10.0 (beta)

Re: [Rd] MASS (and class, nnet, spatial) for R 2.10.0 ?

2009-10-15 Thread Dirk Eddelbuettel
On 15 October 2009 at 09:54, Uwe Ligges wrote: | The PACKAGES file in src/contrib also points to the packages in | src/contrib/2.10.0. It is up to Dirk to use the information in PACKAGES | correctly as it is done for the Windows and Mac binaries on CRAN. I am -- which is why I took care of

[Rd] R segfault in fgets from do_system under high memory use (PR#14008)

2009-10-15 Thread atp
Full_Name: Andrew Piskorski Version: R 2.9.2 (Patched), 2009-09-24, svn.rev 49930, x86_64-unknown-linux-gnu OS: Linux, Ubuntu 8.04.3 LTS Submission from: (NULL) (66.31.65.247) I have a large memory test case which segaults R everytime in an fgets call from R's do_system (see below). This

[Rd] bugs.r-project.org, Submit Changes does nothing (PR#14009)

2009-10-15 Thread atp
Full_Name: Andrew Piskorski Version: not applicable, web-based R bug tracker OS: not applicable, web-based R bug tracker Submission from: (NULL) (66.31.65.247) Once I have submitted a bug via the bugs.r-project.org web interface, I can find the bug and view it. E.g.:

Re: [Rd] PR#14008, R segfault in fgets from do_system under high memory use

2009-10-15 Thread atp
On this issue: http://bugs.r-project.org/cgi-bin/R/incoming?id=14008 Here's a small patch which fixes the problem: $ svn diff src/main/sysutils.c src/unix/sys-unix.c Index: src/main/sysutils.c === --- src/main/sysutils.c

[Rd] R RSS feed

2009-10-15 Thread Paul Gilbert
I was trying to subscribe to an RSS feed from http://developer.r-project.org/RSSfeeds.html but IE chokes on DTDs and Firefox also has trouble with this feed. (I'm not sure if it has trouble with DTDs in general.) I went to one of our web developers to see what I should use to read the feed, and

Re: [Rd] R RSS feed

2009-10-15 Thread Duncan Murdoch
On 10/15/2009 2:46 PM, Paul Gilbert wrote: I was trying to subscribe to an RSS feed from http://developer.r-project.org/RSSfeeds.html but IE chokes on DTDs and Firefox also has trouble with this feed. (I'm not sure if it has trouble with DTDs in general.) I went to one of our web developers

[Rd] forwarded: bug (?) in cut.POSIXt with breaks=integer

2009-10-15 Thread Ben Bolker
From: Vitalie S. vitosmail at rambler.ru Subject: Bug in cut.POSIXt Newsgroups: gmane.comp.lang.r.general Date: 2009-10-15 15:47:48 GMT (1 hour and 29 minutes ago) Hello Everyone, Before reporting decided to post here first: tt - structure(c(1254238817, 1254238859, 1254238969, 1254239080),

[Rd] let R and Rscript infer paths from their own location (PR#14007)

2009-10-15 Thread pkensche
Full_Name: Philip R. Kensche Version: 2.9.1 OS: Linux Submission from: (NULL) (131.174.146.252) Use case: Run R scripts using bin/Rscript or bin/R --no-restore --file=script-file --args args in a heterogeneous computing grid in which it is not possible to predict the actual installation

[Rd] Eigenvalue Bug in psych principal (PR#14010)

2009-10-15 Thread kyler
Full_Name: Kyle Roberts Version: 2.9.2 OS: Windows XP Submission from: (NULL) (129.119.244.130) In 2.9.2, the Eigenvalues from a principal components analysis using principal in the psych package no longer works. It still works in 2.8 and 2.7, but no longer in 2.9.2. For example:

Re: [Rd] Eigenvalue Bug in psych principal (PR#14010)

2009-10-15 Thread Duncan Murdoch
On 10/15/2009 3:15 PM, ky...@smu.edu wrote: Full_Name: Kyle Roberts Version: 2.9.2 OS: Windows XP Submission from: (NULL) (129.119.244.130) In 2.9.2, the Eigenvalues from a principal components analysis using principal in the psych package no longer works. It still works in 2.8 and 2.7, but no

Re: [Rd] R RSS feed

2009-10-15 Thread Yihui Xie
I do not think the problem was caused by DTD. I checked the content of the RSS feed and found there were several places containing characters that were not converted to HTML entities (e.g. should be amp;), or opening tags without corresponding closing tags (e.g. LI without /LI, a typical problem

[Rd] Question when compiling source code with VC++

2009-10-15 Thread cstrato
Dear Duncan, In your document readme.packages.txt you have a very helpful chapter on Using Visual C++. Please allow me to ask you one question: Why do you propose the option /MT instead of option /MD? (To my knowledge usually option /MD is used when compiling programs with VC++.) Best

Re: [Rd] R RSS feed

2009-10-15 Thread Duncan Murdoch
On 15/10/2009 4:31 PM, Yihui Xie wrote: I do not think the problem was caused by DTD. I checked the content of the RSS feed and found there were several places containing characters that were not converted to HTML entities (e.g. should be amp;), or opening tags without corresponding closing

Re: [Rd] Question when compiling source code with VC++

2009-10-15 Thread Duncan Murdoch
On 15/10/2009 5:01 PM, cstrato wrote: Dear Duncan, In your document readme.packages.txt you have a very helpful chapter on Using Visual C++. Please allow me to ask you one question: Why do you propose the option /MT instead of option /MD? (To my knowledge usually option /MD is used when

Re: [Rd] R RSS feed

2009-10-15 Thread Yihui Xie
I guess this package might be of help: http://www.omegahat.org/RTidyHTML/ (by the other Duncan :-) Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-6609 Web: http://yihui.name Department of Statistics, Iowa State University 3211 Snedecor Hall, Ames, IA On Thu, Oct 15, 2009 at 4:41

[Rd] post-installation startup problem with 2.10.0

2009-10-15 Thread Mark.Bravington
I've just installed R2.10.0 v50082, and found the problem described below the first few times I launched it. Did not occur with v49613 (the previous most recent version I have). The problem has now gone away, and is therefore non-reproducible, but there seems to be something up with parameter