Re: [Rd] Problem with WARNING...headers with CRLF line endings

2010-09-25 Thread cstrato
Dear Herve, I have just tested the modification of Makefile.win: clean: rm -f $(MYOBJ) *.a *.d *.rc xpsLinkDef.h and it was sufficient to eliminate the warning message. Thus R CMD check seems indeed to run the clean step. I have just uploaded the new version to BioC2.7. Best regards C

Re: [Rd] running 'make' failed during vignette creation ('R CMD build') on Windows

2010-09-25 Thread Hervé Pagès
This fixed in current R-alpha (r52991) too. Thanks! H. On 09/15/2010 11:33 PM, Hervé Pagès wrote: I think I found the problem. During the recent transition from Perl-based to R-based 'R CMD check/build', the rcmdfn() function in src/gnuwin32/front-ends/rcmdfn.c has been hacked quite a bit. Thi

Re: [Rd] Lack of consistent cross-platform behaviour of tools:::buildVignettes()

2010-09-25 Thread Hervé Pagès
Hi, In current R-alpha (r52991), consistent cross-platform behavior has been restored, thanks! That is, on both Unix and Windows, ${R_HOME}/bin/R doesn't add variables to the environment, but ${R_HOME}/bin/R CMD does. Is there any reason why ${R_HOME}/bin/R couldn't add those variables to the en