Re: [Rd] Using 'dimname names' in aperm() and apply()

2012-04-20 Thread ghostwheel
I'm replying here to quite an old thread started by me. I think the dimnames facility is underused in R. I'm currently using a 5-dimensional array. It is quite cumbersome to have to write y[0] Since the array does have dimnames, I would like to be able to say instead y[tree=0] Below is a

[Rd] R CMD check: Sys.getenv(R_GSCMD) cannot contain full pathname (contrary to docs)

2012-04-20 Thread Henrik Bengtsson
Hi, in help(R_GSCMD) it says R_GSCMD: Optional. The path to Ghostscript, used by dev2bitmap, bitmap and embedFonts. Consulted when those functions are invoked.. However, if 'R_GSCMD' contains a full pathname to the Ghostscript executable (as above path indicates), e.g. Sys.getenv(R_GSCMD) [1]

Re: [Rd] combining large list of data.frames

2012-04-20 Thread Patrick Aboyoun
Cole, Bioconductor's high throughput sequencing infrastructure package IRanges contains code that may be useful for speeding up base::rbind.data.frame. I've extracted the salient bits from that rbind method, but left the corner case handling code out. IRanges's rbind method took the approach