Re: [Rd] formatR 1.0 caused error

2014-09-18 Thread Zhang,Jun
Yihui, I installed knitr_1.6.18, and user reported no warning any more. In my other related posting I thought rmarkdown was the problem, actually there are two part of the problems. Using older version of rmarkdown caused no html file generated, which is more serious, and the warning was cleared

Re: [Rd] formatR 1.0 caused error

2014-09-18 Thread Yihui Xie
Sorry, but this is a wrong list to write to. I'll reply anyway this time... The formatR package should be irrelevant in this case -- you were seeing warnings of deprecation. The error came from elsewhere. It is hard to say what the problem was without a reproducible example. Anyway, to "fix" the w

Re: [Rd] formatR 1.0 caused error

2014-09-18 Thread Zhang,Jun
Problem solved. User library location had an older rmarkdown, removed that, so that the current rmarkdown 0.3.3 at the system library location is being used. -Original Message- From: r-devel-boun...@r-project.org [mailto:r-devel-boun...@r-project.org] On Behalf Of Zhang,Jun Sent: Thursda

[Rd] formatR 1.0 caused error

2014-09-18 Thread Zhang,Jun
Recently in our R 3.1.0 installation the package formatR was upgraded to version 1.0, doing my usual thing, I got the following error, and the destination html file was not generated. What can I do if I want to stay at the current formatR version? Jun Error: unrecognized fields specified in htm

Re: [Rd] help.start() web page contains a bad link

2014-09-18 Thread Berend Hasselman
On 18-09-2014, at 19:48, Davison, Jerry wrote: > Hi, > > At my work, the web page opened with the R command help.start() has a link > "User Manuals". Activating it gives this response: > > Error in vignettes[i, "PDF"] : subscript out of bounds > Fixed in R 3.1.1 patched. Berend >> sess

[Rd] help.start() web page contains a bad link

2014-09-18 Thread Davison, Jerry
Hi, At my work, the web page opened with the R command help.start() has a link "User Manuals". Activating it gives this response: Error in vignettes[i, "PDF"] : subscript out of bounds > sessionInfo() R version 3.1.1 (2014-07-10) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] C

[Rd] last user argument missing from Rscript --verbose

2014-09-18 Thread Harris A. Jaffee
The loop that echoes the arguments almost always stops too soon. It apparently does that to avoid echoing the "--args" (that had been inserted) when there are no user arguments. However, when there are user arguments, the next element of the 'av' array is the last argument and usually not "--a

[Rd] "no visible global function definition" using R-Devel check utility

2014-09-18 Thread Tobias Setz
Hello All If I check the package fAssets using R-3.1.1 (2014-07-10 under Windows) I don't get any notes. If I do the same using R-Devel (2014-09-17 r66626 under Windows) I get the following note: . assetsMeanCov: no visible binding for global variable 'scaleTau2' . I'll try to explain why with a

Re: [Rd] Debug an R windows (Fortran) DLL within R with gdb?

2014-09-18 Thread Duncan Murdoch
On 17/09/2014, 11:52 PM, Andre Mikulec wrote: > Help, > > My Rgui.exe, main.f, main.o, and main.dll are all in the same directory. > When I try to set a breakpoint, I get this response > > (gdb) b main.f:3 > No source file named main.f > > I tried the -gdwarf-2 requirement in both