Re: [Bioc-devel] minor suggestion for BiocStyle?

2014-10-02 Thread Hervé Pagès
Hi, This makes a lot of sense. I also find a bit disturbing that the main text cannot immediately be distinguished from other things like captions or page headers (BiocStyle places the title of the vignette at the top of each page but this header looks exactly like the main text, except that

Re: [Rd] debuggingState() analogous to tracingState() ?

2014-10-02 Thread Martin Maechler
We have had some conversation within R core, lead by Duncan Murdoch and me, about a proposal to extend the current tracingState() functionality by something tentatively called debuggingState(). Duncan has allowed me to copy the previous conversation (after very minor editing): The following

Re: [Rd] Intel Fortran compiler returns a -1 TRUE value

2014-10-02 Thread Ei-ji Nakama
Hello The value generated by Fortran's .TRUE. evaluates as truthy -- as in all(z[[1]]) -- but is neither equal to nor identical to TRUE. Its numeric conversion to -1 is most unusual, every other system I've tried converts to +1. Please read the -fpscomp logicals option of ifort. --

Re: [Rd] debuggingState() analogous to tracingState() ?

2014-10-02 Thread Richard M. Heiberger
Interesting timing. I could have used this additional control yesterday in class. I am teaching a graduate Statistical Computing class. Last night I went through the symbolic deriviatives (the deriv and D functions) in Section 9.6 of the Blue Book. The D function is recursive. I illustrated

Re: [Rd] debuggingState() analogous to tracingState() ?

2014-10-02 Thread Jonathan McPherson
I don't have much of an opinion on these questions. I've never used the tracingState() function, though I use trace() all the time (via setBreakpoint()). You might want to consult people who write debugger front-ends. which I am now doing: I'm including ESS-core, Jonathan

Re: [Rd] debuggingState() analogous to tracingState() ?

2014-10-02 Thread Stephan Wahlbrink
The possibility to temporarily turn off debugging sounds interesting. A short comment at the end Am 2014-10-02 um 16:55 schrieb Martin Maechler: We have had some conversation within R core, lead by Duncan Murdoch and me, about a proposal to extend the current tracingState() functionality by

Re: [Rd] debuggingState() analogous to tracingState() ?

2014-10-02 Thread Mark.Bravington
Just FYI: the 'debug' package lets you set a stop-before-exit, and of course the ability to adjust breakpoints while the function is running. You can get the current return value via 'get.retval()'. There is some rough-edged support for debugging scripts, too. Mark Mark Bravington CSIRO CMIS