Re: [Rd] Update CRAN submission process

2016-05-27 Thread Michael Sumner
On Sat, 28 May 2016 at 05:59 Patrick Perry wrote: > > The CRAN submission process seems in need of a massive overhaul. Why has > this process not been automated yet? > > Many improvements to R come via extensions to R. See Hadley Wickham's R Packages book for ways to

Re: [Rd] Update CRAN submission process

2016-05-27 Thread Gavin Simpson
In the interests of, well, everyone, I will just mention that this is the wrong list. CRAN != R Core and asking questions about CRAN is OT for this list as this is for topics related to developing R, the software. You should address CRAN questions to the CRAN maintainers, but I suggest you don't

[Rd] Update CRAN submission process

2016-05-27 Thread Patrick Perry
The CRAN submission process seems in need of a massive overhaul. Why has this process not been automated yet? — Patrick Perry Assistant Professor NYU Stern School of Business __ R-devel@r-project.org mailing list

Re: [Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread Jesper Gådin
I am developing packages(if that is of importance), and hoped the thread could develop into discussions about how to improve the functions addressed. But can admit that I was not sure where to post this one, as it definitely is of general concern as well. Anyway, if anyone found this interesting,

Re: [Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread James W. MacDonald
The Bioc-devel list is intended for people who are developing packages. Your question should be posted on the bioconductor support site, https://support.bioconductor.org. Jim On Fri, May 27, 2016 at 11:05 AM, Jesper Gådin wrote: > Hello everyone, > > I find

[Bioc-devel] inconsistent results from applyPileups and pileLettersAt

2016-05-27 Thread Jesper Gådin
Hello everyone, I find inconsistent results from applyPileups and pileLettersAt. I have a placed a full example on github, so you can try the code with data that will reproduce what I am suspecting is a "bug". #Repo with reproducible example https://github.com/pappewaio/ExampleData #Here a

[Rd] Evolution of the R native interface

2016-05-27 Thread Lukas Stadler
Hi! I hope you don’t mind me posting this call for participation - I do think the matter at hand is very important for the people on this list, and the people on this list are very important for the matter at hand. For historical reasons, the native API provided by R for use by applications

Re: [Bioc-devel] [SPAM???] Re: Pushing updates in the release branch

2016-05-27 Thread Charles Joly
Hello Valerie, The tricky part with Encode is that there is no release schedule. For instance, in the last month, there has been a few hundreds new datasets ( https://www.encodeproject.org/news/). I think there is an increase in the amount of data submitted before the Encode users meeting in