[Rd] ACM license link broken

The URL listed under https://svn.r-project.org/R/trunk/share/licenses/license.db for the ACM license, http://www.acm.org/publications/policies/softwarecrnotice , gives a 404 error. I think this should be replaced by https://www.acm.org/publications/policies/software-copyright-notice ? For

[Rd] typo or stale info in qr man

man for `qr` says that the function uses LINPACK's DQRDC, while it in fact uses DQRDC2. ``` The QR decomposition of the matrix as computed by LINPACK or LAPACK. The components in the returned value correspond directly to the values returned by DQRDC/DGEQP3/ZGEQP3 ```

Re: [Rd] improve 'package not installed' load errors?

On 24/10/2016 1:51 PM, Kevin Ushey wrote: Hi R-devel, One of the more common issues that new R users see, and become stumped by, is error messages during package load of the form: > library(ggplot2) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :

Re: [Rd] improve 'package not installed' load errors?

Dear Kevin, As others have mentioned, it's my sense that this kind of error has become more frequent -- at least I see students who encounter these errors more frequently. I agree that a less cryptic error message might help. Best, John -- John Fox,

[Rd] improve 'package not installed' load errors?

Hi R-devel, One of the more common issues that new R users see, and become stumped by, is error messages during package load of the form: > library(ggplot2) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'Rcpp' Error: package

Re: [R-pkg-devel] Only printing a message once per top-level call.

This is not a complete answer to your problem, but here is an example of how to make and store messages of a certain class, "lowMessage", and later print a table of the messages and their counts. > lowMessage <- function(text, call = sys.call(-1)) { # make a message of class

Re: [Bioc-devel] SummarizedExperiment

Thanks very much. I will do that. Best wishes, Andrea From: Martin Morgan Sent: 24 October 2016 13:58:28 To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org Subject: Re: [Bioc-devel] SummarizedExperiment On 10/24/2016 07:48

Re: [Bioc-devel] SummarizedExperiment

On 10/24/2016 07:48 AM, Rodriguez Martinez, Andrea wrote: Hi, I am developing a package based on the SummarizedExperiment package. I have included the SummarizedExperiment package in both DESCRIPTION and NAMESPACE files. In some functions of my package, and also in the vignette, I use the

Re: [Bioc-devel] odd svn event

Hi Vince, probably because of spaces in the file name, see e.g. https://bugs.launchpad.net/ubuntu/+source/apache2/+bug/1284641 I had once a similar problem with BioC svn, solved it by deleting the affected directory locally and updating. HTH, Andrzej On Sun, Oct 23, 2016 at 11:27 PM, Vincent

[Bioc-devel] Error in DESeq Installation

Dear All, I am getting error in DESeq installation in R. package ‘DESeq’ is not available (for R version 3.3.1) > source("http://www.Bioconductor.org/biocLite.R ") Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help >

[R-pkg-devel] Only printing a message once per top-level call.

Dear All, I have a package (ergm, in case you are wondering) that has some low- level routines (say, low()) that produce messages that the end-user needs to see and that tend to be called multiple times for every time the top-level routine (say, high()) is called, often by other routines that are