Re: [Rd] A few suggestions and perspectives from a PhD student

> There are tradeoffs. As demonstrated above, the pipe is clearly > inferior in that it is doing a lot of complicated stuff under the > hood, and when you try to traceback() through the call stack you have > to sift through all that complicated stuff. That's a pretty big > drawback in my opinion.

[Bioc-devel] fasta twobit for release 87 and 88 added to AnnotationHub

Hello all, The fasta (twobit files) for release-87 and release-88 have been added to AnnotationHub and are currently available in Bioc3.6 (development) with AnnotationHub (<= 2.9.0): > library(AnnotationHub) > hub = AnnotationHub() updating metadata: retrieving 1 resource

Re: [Rd] A few suggestions and perspectives from a PhD student

On Mon, May 8, 2017 at 8:08 AM, Antonin Klima wrote: > Thanks for the answers, > > I’m aware of the ‘.’ option, just wanted to give a very simple example. > > But the lapply ‘…' parameter use has eluded me and thanks for enlightening me. > > What do you mean by messing up

[Bioc-devel] Applying bugfixes to both 3.5 release branch and devel branch

Dear Bioconductor developers, What's the proper way of applying bugfixes to both the 3.5 release branch and the devel branch? Should I simply commit the same things twice? Kind regards, Roel Janssen -- De informatie

Re: [Rd] A few suggestions and perspectives from a PhD student

Thanks for the answers, I’m aware of the ‘.’ option, just wanted to give a very simple example. But the lapply ‘…' parameter use has eluded me and thanks for enlightening me. What do you mean by messing up the call stack. As far as I understand it, piping should translate into same code as

[Bioc-devel] Update/ replace package

Dear mailing list, We created an updated version of our package "anota", which will run under a new name "anota2seq". We would like to update/replace the anota package and also change the name. If we update the "anota" package using the SVN, will that also change the name of the "anota"

[Bioc-devel] city/country or IP list for package downloading

Dear Bioconductor team, I am the maintainer of RnaSeqSampleSize package. I am going to make some slides to introduce my packages on Bioconductor. Do you have any other download stats besides the number of downloads, such as downloading from city/country list, IP address list? I am going to