Re: [Bioc-devel] Question regarding potential package

On 01/16/2018 04:44 PM, Rupji, Manali wrote: Hello, I have recently developed a shiny R package to perform clustering analysis. It is currently in publication and under review. I wish to also create a bio-conductor package for the same. Does bio-conductor allow a shiny tool to be created as

Re: [Bioc-devel] Missing link files in Windows (release and devel)

On 01/16/2018 10:37 AM, Leonardo Collado Torres wrote: Hi, I have been seen warnings in several of my packages on both release and devel only in the Windows build machines in relation to missing link files. Is this something that I can address from my side or a more widespread issue? If it

[Bioc-devel] Question regarding potential package

Hello, I have recently developed a shiny R package to perform clustering analysis. It is currently in publication and under review. I wish to also create a bio-conductor package for the same. Does bio-conductor allow a shiny tool to be created as a bio-conductor package? Any help in this

Re: [Bioc-devel] Problems creating a new GitHub repository for an existing Bioconductor package

Hi, Please keep following the instructions. You are on the right track. The keys have been processed and you should be able to add your upstream now. Best, Nitesh > On Jan 16, 2018, at 4:48 AM, Pau Bellot Pujalte wrote: > > Dear Bioconductor devel team, > > I'm Pau

Re: [Rd] OpenBLAS in everyday R?

Dear R Developers, I attach a complete summary of all the Know-How that has been generated during Dec 2017 & Jan 2018 in R-devel Mailing List related to the Dynamic Change of: - Regular Single Threaded BLAS. - And a Multi-threaded BLAS Implementation (e.g.: OpenBLAS):

Re: [Bioc-devel] Numeric Operation on DataFrame

Hi, I think I remember it was once suggested on this list that DataFrame objects with numeric columns could support math/summarization operations, like data.frame objects do (can't find the thread to provide the link, sorry). I'll mention that wrapping a DataFrame object (or any matrix-like or

Re: [Rd] Bug 17159 - recursive dir.create() fails on windows shares due to permissions

Hi all, I ran into this exact issue yesterday during the exam of statistical computing. Users can install packages in a user library that R tries to create automatically on the network drive of the student. But that doesn't happen as the unc path is not read correctly, leading to R attempting to

[Bioc-devel] Missing link files in Windows (release and devel)

Hi, I have been seen warnings in several of my packages on both release and devel only in the Windows build machines in relation to missing link files. Is this something that I can address from my side or a more widespread issue? If it matters, I use roxygen2 for making my Rd files. Best,

[Bioc-devel] Duplicate commits in Bioconductor commit history

Dear all, There are duplicated commit in the Bioconductor commit history of the qcmetrics package, which stop me from pushing additional changes. Here is an illustration of the problem: $ git clone g...@git.bioconductor.org:packages/qcmetrics.git Cloning into 'qcmetrics'... cd remote: Counting

Re: [Bioc-devel] Numeric Operation on DataFrame

Please be more specific about the desired operations, or, better, submt a pull request with them. colMeans() in particular was intentionally omitted because it depends on having homogeneous data, which is better suited for a matrix, not a data frame. On Mon, Jan 15, 2018 at 10:00 PM, Dario