Re: [Bioc-devel] EXTERNAL: permanent link to package

I think, http://bioconductor.org/packages/CAMTHC should be fine. This link is permanent, but the 10.18129/B9.bioc.CAMTHC link isn’t a bad idea as well. This DOI link just resolves to the original link ( http://bioconductor.org/packages/CAMTHC) anyway. Take a look a this too,

[Bioc-devel] permanent link to package

Dear Bioc Team, My package is still in the develop version. But I need to add a permanent URL link in my paper. Which option is better: http://bioconductor.org/packages/CAMTHC or 10.18129/B9.bioc.CAMTHC Thanks, Lulu [[alternative HTML

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

We assume most users are using release not devel. So this page is appropriate for the majority users using release 3.7. This page is scheduled to be updated when the next release happens and BiocManager goes live in the Bioc3.8 release. It has been pointed out and we have it as a task to

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

Yes DropletUtils has a release and a devel page; as most of the Bioconductor package do. The devel pages have been updated for the BiocManager while the release still are BiocInstaller. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics &

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

Now I am wondering about my sanity... it seems like perhaps DropletUtils has a release package page too? In any event, looks like things are all set. thanks! --t On Tue, Jul 31, 2018 at 9:21 AM Shepherd, Lori < lori.sheph...@roswellpark.org> wrote: > Where exactly did you see this? It will

Re: [Rd] help building very old R

[Oops, I seem to have managed not to send this yesterday...] Not sure how to fix, but note that configure is not lying to you: > configure:13319: /usr/include/tk8.3/tk.h: No such file or directory tk8.3, not tcl8.3 -pd > On 30 Jul 2018, at 06:35 , David Hugh-Jones wrote: > > Hi guys, > >

Re: [Bioc-devel] EXTERNAL: introducing BiocManager in devel package pages?

Where exactly did you see this? It will be up to the package maintainers to update their package documentation (vignettes and such). We have updated the devel package landing pages to include the new BiocManager instructions already:

[Bioc-devel] introducing BiocManager in devel package pages?

So I was looking at DropletUtils and stumbled on this: To install this package, start R and enter: ## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R;) biocLite("DropletUtils") It seems like maybe devel might be a sensible place to start migrating

[Rd] RFC: make as.difftime more consistent or convenient

Hello! I notice I can convert strings containing hour, minute or second specifications to a 'difftime': > as.difftime("12 h", "%H") Time difference of 12 hours > as.difftime("12 m", "%M") Time difference of 12 mins > as.difftime("12 s", "%S") Time difference of 12 secs But I can't do so with a

Re: [Rd] Code Optimization: print.data.frame + as.data.frame(head(x, n = options("max.print")))

> Juan Telleria Ruiz de Aguirre > on Tue, 31 Jul 2018 08:19:33 +0200 writes: > I polished a little bit more the function: > * Used: getOption("max.print") > * Added comment at the end: cat('[ reached getOption("max.print") -- > omitted ', omitted,' rows ]') > I

Re: [Rd] apply with zero-row matrix

On Mon, Jul 30, 2018 at 6:08 PM, Martin Maechler wrote: >> David Hugh-Jones >> on Mon, 30 Jul 2018 10:12:24 +0100 writes: > > > Hi Martin, Fair enough for R functions in general. But the > > behaviour of apply violates the expectation that apply(m, > > 1, fun) calls fun n

Re: [Rd] Code Optimization: print.data.frame + as.data.frame(head(x, n = options("max.print")))

I polished a little bit more the function: * Used: getOption("max.print") * Added comment at the end: cat('[ reached getOption("max.print") -- omitted ', omitted,' rows ]') function (x, ..., digits = NULL, quote = FALSE, right = TRUE, row.names = TRUE) { n <- length(row.names(x))