[Bioc-devel] write.table() of DataFrame introduces \n linebreaks in CSV output

2018-10-24 Thread Neumann, Steffen
Hi, we're seeing a problem with a S4Vectors::DataFrame consisting of numbers and lists where write.table() introduces "\n" linebreaks that render the written CSV to be broken and unreadable. The minimum example is: library(S4Vectors) l <- list(list(1), list(as.character(2:99)), list(3))

Re: [R-pkg-devel] SystemRequirements: Berkeley DB STL

2018-10-24 Thread Toby Hocking
Hi Dirk thanks for the helpful response. On Wed, Oct 24, 2018 at 5:09 AM Dirk Eddelbuettel wrote: > > On 23 October 2018 at 14:02, Toby Hocking wrote: > | I would like to put the https://github.com/tdhock/PeakSegDisk package on > | CRAN. This package needs Berkeley DB C++ Standard Template

[Bioc-devel] Bioc 3.8 feature freeze

2018-10-24 Thread Obenchain, Valerie
Developers, The release of Bioconductor 3.8 is one week out. Today marks the 'feature freeze' of 3.8 where we ask that all commits are limited to bug fixes and documentation (no more API changes). Thanks. Valerie This email message may contain legally privileged and/or confidential

Re: [Rd] Bug in file.access on Windows when using network shares

2018-10-24 Thread Tomas Kalibera
Dear Nick, I've updated the implementation of file.access() on Windows to fall back to _waccess() when the security descriptor is not available. It now works on my system with files selected for offline use even when the underlying samba share (on a non-Windows host) becomes unavailable. As I

Re: [R-pkg-devel] SystemRequirements: Berkeley DB STL

2018-10-24 Thread Dirk Eddelbuettel
On 23 October 2018 at 14:02, Toby Hocking wrote: | I would like to put the https://github.com/tdhock/PeakSegDisk package on | CRAN. This package needs Berkeley DB C++ Standard Template Library. What do | I need to do to get this package (with compiled mac/windows binaries) on | CRAN? | | This

Re: [Rd] Suggestion: Make CRAN source URLs immutable

2018-10-24 Thread Kurt Hornik
> Kurt Wheeler writes: Try e.g. https://cran.r-project.org/package=httr=1.3.1 https://cran.r-project.org/package=httr=1.3.0 -k > Hello, I hope the is the right list to send this suggestion to. > I was wondering if it might be possible to have CRAN store the most current > version of a

[Rd] Suggestion: Make CRAN source URLs immutable

2018-10-24 Thread Kurt Wheeler
Hello, I hope the is the right list to send this suggestion to. I was wondering if it might be possible to have CRAN store the most current version of a package's source tarball at a location that does not change. As an example, the source tarball for `httr` is stored at