Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Joris Meys
I'm sorry, I should have indeed given a better description. The package I'm seeing the issue with, can be found here : https://github.com/CenterForStatistics-UGent/RCM The problem becomes visible when opening an RStudio session and running BiocCheck::BiocCheck() (This is a Bioconductor package)

Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Joris Meys
On Thu, 6 Dec 2018, 16:04 Ralf Stubner On 06.12.18 15:19, Joris Meys wrote: > > I know this R CMD build ignores these files and folders by default, but R > > CMD INSTALL doesn't apparently. > > to me this is not apparent. I just tried "R CMD INSTALL ." in a package > directory with a .git director

Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Dirk Eddelbuettel
On 6 December 2018 at 15:59, Ralf Stubner wrote: | On 06.12.18 15:19, Joris Meys wrote: | > I know this R CMD build ignores these files and folders by default, but R | > CMD INSTALL doesn't apparently. | | to me this is not apparent. I just tried "R CMD INSTALL ." in a package | directory with a

Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Ralf Stubner
On 06.12.18 15:19, Joris Meys wrote: > I know this R CMD build ignores these files and folders by default, but R > CMD INSTALL doesn't apparently. to me this is not apparent. I just tried "R CMD INSTALL ." in a package directory with a .git directory. This went without any problems. What do you ob

Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Joris Meys
On Thu, 6 Dec 2018, 15:37 Dirk Eddelbuettel > > These have been auto-ignored by R CMD build for a loong time. Are you > maybe making the mistake of installing from a _directory_ as opposed to > first > creating a tarball? > > Dirk > > -- > http://dirk.eddelbuettel.com | @eddelbuettel | e...@de

Re: [Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Dirk Eddelbuettel
On 6 December 2018 at 15:19, Joris Meys wrote: | Dear all, | | quite a few package tools depend on R CMD INSTALL today for rapid testing | of a package, eg: | | - devtools::install() | - BiocCheck::BiocCheck() | | I've noticed that at least BiocCheck() doesn't ignore version control | folders

[Rd] Dealing with .git folder when using R CMD INSTALL

2018-12-06 Thread Joris Meys
Dear all, quite a few package tools depend on R CMD INSTALL today for rapid testing of a package, eg: - devtools::install() - BiocCheck::BiocCheck() I've noticed that at least BiocCheck() doesn't ignore version control folders like .git. Trying to find out why this was, lead me to R CMD INSTALL.