Hi Duncan,
Of course I appreciate the value of a centralised repository, and I
acknowledge the hard work that goes into maintaining it. That does not mean
that it should be beyond criticism. I wrote out of frustration, but also
because I hope things could be better.
David
On Wed, 12 Jun 2019
On 12/06/2019 4:57 p.m., David Hugh-Jones wrote:
Hi all,
Not for the first time, my package has a bug that isn't found on rhub,
travis, appveyor, or my local machine, but is found on CRAN. This time it's
Windows-only, so I can't even download a Docker image and investigate that
way.
TBH I am
On Wed, 12 Jun 2019 at 22:58, David Hugh-Jones wrote:
>
> Hi all,
>
> Not for the first time, my package has a bug that isn't found on rhub,
> travis, appveyor, or my local machine, but is found on CRAN. This time it's
> Windows-only, so I can't even download a Docker image and investigate that
>
On 6/12/19 08:26, Vincent Carey wrote:
> remedied by installation of latest S4Vectors/SummarizedExperiment from git
Good. I just fixed this in git/github 5 min ago:
https://github.com/Bioconductor/SummarizedExperiment/commit/01aa07a87b72b7423bea38028fffba4e896fdcf3
H.
>
> On Wed, Jun 12,
remedied by installation of latest S4Vectors/SummarizedExperiment from git
On Wed, Jun 12, 2019 at 10:53 AM Vincent Carey
wrote:
> my installation of Bioc 3.10 passes valid()
>
>
> > ee = SummarizedExperiment(assay=data.matrix(mtcars))
>
> > ee
>
> class: SummarizedExperiment
>
> dim: 32 11
>
>
my installation of Bioc 3.10 passes valid()
> ee = SummarizedExperiment(assay=data.matrix(mtcars))
> ee
class: SummarizedExperiment
dim: 32 11
metadata(0):
assays(1): ''
rownames(32): Mazda RX4 Mazda RX4 Wag ... Maserati Bora Volvo 142E
rowData names(0):
colnames(11): mpg cyl ... gear
Thanks so much for looking into this. You were right, my path that I
had been too lazy to update was pointing at an older installation of R
that I had been too lazy to uninstall.
On Wed, Jun 12, 2019 at 6:41 PM Uwe Ligges
wrote:
>
> So this is likely caused by your setup as I simply get
>
> $ R
@ Gabriel:
"Avoid tilde in file names":
Not quite.
A tilde *suffix* is commonly used by *nix editors for backup files
https://unix.stackexchange.com/questions/76189/what-does-the-tilde-mean-at-the-end-of-a-filename
On Wed, Jun 12, 2019 at 2:43 AM Kurt Hornik wrote:
> > Duncan Murdoch
Too many layers of complexity for me, can you take the package sources
and zat /or zip) them for me and send them? Then I'll take a look.
Best,
Uwe Ligges
On 12.06.2019 08:23, Rob Foxall wrote:
Thanks. I ran in R:
devtools::build("myPackage")
That gave me a warning:
NB: this package now
> Duncan Murdoch writes:
With c76695 in the trunk, we now only tilde expand file names starting
with a tilde also when using readline.
Best
-k
> On 11/06/2019 4:34 p.m., William Dunlap via R-devel wrote:
>> Note that R treats tildes in file names differently on Windows and Linux.
>> On
Thanks. I ran in R:
devtools::build("myPackage")
That gave me a warning:
NB: this package now depends on R (>= 3.5.0)
WARNING: Added dependency on R >= 3.5.0 because serialized
objects in serialize/load version 3 cannot be read in older versions
of R.
File(s) containing such
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