On 13 January 2020 at 14:51, Therneau, Terry M., Ph.D. wrote:
| 3. Dirk gave good input about the flags in R CMD check and how to find them.
One more
| line in the "Writing R Extensions" manual would have been helpful, namely
that many of the
| options are NOT available in the options() com
Thank you to all who replied with helpful suggestions. I had to run off to
meetings and
talks for a bit so am now processing it all.
1. It turns out that the issue was not with coxme, but with bsdmatrix, a
package that
coxme calls. It just happens to have a function ismat() with the same ge
Those of us stuck on Windows but who attempt to develop properly are
wounded to the quick, sir!
:)
Avi
On Mon, Jan 13, 2020 at 12:24 PM Martin Maechler
wrote:
> > Ben Bolker
> > on Mon, 13 Jan 2020 11:49:09 -0500 writes:
>
> > From R NEWS (changes in 3.6.0)
> > Experimental
> Ben Bolker
> on Mon, 13 Jan 2020 11:49:09 -0500 writes:
> From R NEWS (changes in 3.6.0)
> Experimentally, setting environment variable _R_CHECK_LENGTH_1_LOGIC2_
> will lead to warnings (or errors if the variable is set to a ‘true’
> value) when && or || encounter an
On 13/01/2020 11:02 a.m., Therneau, Terry M., Ph.D. via R-devel wrote:
Where can I find out (and replicate) what options as-cran turns on?
The issue: the following lines generate an error in R CMD check --as-cran for
coxme. But
there is no error without as-cran nor is there one when I run the
From R NEWS (changes in 3.6.0)
Experimentally, setting environment variable _R_CHECK_LENGTH_1_LOGIC2_
will lead to warnings (or errors if the variable is set to a ‘true’
value) when && or || encounter and use arguments of length more than one.
On 2020-01-13 11:46 a.m., Therneau, Terry M., Ph.D.
Thanks for the feedback Dirk. I sent my follow-up before I saw it.
Looking at the source code, it appears that there is no options() call to turn this on.
Nor does "R --help" reveal a command line option.
How then does a user turn this on outside of the R CMD check envirionment, so as to chase
I've been fighting a CMD check error for coxme this morning. I thought I had
it fixed,
but instead I had forgotton --as-cran on my last test run. So the version just
submitted
to CRAN has warning messages in the log.
I think it is an issue with CRAN. I've sent a message to R-devel asking
On 13 January 2020 at 10:02, Therneau, Terry M., Ph.D. via R-devel wrote:
| Where can I find out (and replicate) what options as-cran turns on?
See the file src/library/tools/R/check.R in the R sources, and grep for
as_cran which is the internal variable controlled by the --as-cran option
[...]
Where can I find out (and replicate) what options as-cran turns on?
The issue: the following lines generate an error in R CMD check --as-cran for
coxme. But
there is no error without as-cran nor is there one when I run the code in a
terminal window.
ismat <- function(x) inherits(x, "matrix"
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