Re: [Rd] Plotmath on Fedora 31 broken with with pango >= 1.44 - workarounds?

2020-04-07 Thread Gabriel Becker
Paul et al, I will try to do this tonight or tomorrow, though it will not be built with th system tools because I have yet to get that tto work locally (spent a good chunk of this morning trying). I will send a separate messaage regarding those difficulties as well so that we can at least confirm

Re: [Rd] Plotmath on Fedora 31 broken with with pango >= 1.44 - workarounds?

2020-04-07 Thread Paul Murrell
The R-symfam branch (r78176) is now working, for my basic tests, on ... Ubuntu (pango < 1.44) Ubuntu (no pango) Fedora (pango > 1.44) Windows I need help to confirm that this builds on macOS and that the basic tests work ... https://github.com/pmur002/R-symfam-testing Brian has been helpin

[Rd] ASAN

2020-04-07 Thread Therneau, Terry M., Ph.D. via R-devel
I'm trying to chase down a possible issue with the survival package, and so was trying to resurrect my ASAN version of r-devel.   I added the lines to config.site for CC, CFLAGS and MAIN_LDFLAGS per section 4.3.3 of the  'packages' documentation, and lines to ~/.R/Makevars. I followed that with

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Hervé Pagès
Agreed. I don't see any evidence of a "hard limit" here. It just looks like the code you're running has exhausted the memory of your machine. It doesn't require creating a lot of 12.6 Gb vectors to do that, even on a machine with a lot of memory ;-) H. On 4/7/20 08:05, Thierry Onkelinx via R-

Re: [Rd] [SPAM] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Michael Dewey
Dear Samuel Does the FAQ for Windows section 2.9 help you here? Michael On 07/04/2020 12:35, Samuel Granjeaud IR/Inserm wrote: Hi, I am not not sure whether this topic belongs to this mail list, but I feel the subscribers here should be the right audience. I noticed that the memory limit repor

Re: [Rd] Rtools and R 4.0.0?

2020-04-07 Thread Kevin Ushey
That's great to see, although I suspect it's still a speculative change and could be backed out if any non-trivial issues were encountered. Regardless, I would like to thank R core, CRAN, and Jeroen for all of the time that has gone into creating and validating this new toolchain. This is arduous

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Thierry Onkelinx via R-devel
Dear Samuel, The most important information from your mail was the actual error message: "cannot allocate vector of size 12.6 Gb". You'll need to know what code generated this error message. And then figure out if the code does something sensible. Often that is not the case when you get a similar

Re: [Rd] Rtools and R 4.0.0?

2020-04-07 Thread Dirk Eddelbuettel
There appears to have been some progress on this matter: -Note that @command{g++} 4.9.x (as used for @R{} on Windows up to 3.6.x) +Note that @command{g++} 4.9.x (as used on Windows prior to @R{} 4.0.0) See SVN commit r78169 titled 'anticipate change in Windows toolchain', or the mirrored git co

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Marc Schwartz via R-devel
Hi Samuel, You may already be aware, but if not, RStudio has their own support mechanisms here: https://support.rstudio.com/hc/en-us If this does turn out to be RStudio specific, you may wish to check there for additional insights. Regards, Marc Schwartz > On Apr 7, 2020, at 10:24 AM, To

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Tomas Kalibera
Hi Samuel, please also have a look at ?memory.limit. You can set this limit at R startup. It is in megabytes. Maybe R Studio sets it at runtime. Best Tomas On 4/7/20 3:57 PM, Samuel Granjeaud IR/Inserm wrote: Hi Tomas, Many thanks for your answer. Here is a copy of a fresh session under RS

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Samuel Granjeaud IR/Inserm
Hi Tomas, Many thanks for your answer. Here is a copy of a fresh session under RStudio, and after a copy under Rgui. Strangely enough the result of memory.limit() is not the same. Without your question I would not have looked to RGui, being used to work with RStudio. The value under RGui so

Re: [Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Tomas Kalibera
Hi Samuel, could you please provide more information? Where do you see the limit reported or how did you trigger it, what version of Windows do you have, are you using 64-bit build of R (sessionInfo()) Please check help("Memory-limits") and section 8 of R Admin manual Best, Tomas On 4/7/20

[Rd] Hard memory limit of 16GB under Windows?

2020-04-07 Thread Samuel Granjeaud IR/Inserm
Hi, I am not not sure whether this topic belongs to this mail list, but I feel the subscribers here should be the right audience. I noticed that the memory limit reported under Windows is 16 GB. I am wondering how to increase it. I didn't found anything in Rprofile.site nor .Rprofile. Is this li

Re: [Rd] RIOT 2020

2020-04-07 Thread Stepan
After carefully considering the current situation regarding COVID-19, we decided to cancel this year's RIOT workshop. Best regards, Stepan On 25. 02. 20 17:38, Stepan wrote: I hope you don’t mind us using this mailing list for a small advertisement, but we think it is most relevant for this gr