Are you missing the 32-bit Java JDK?
Cheers,
S
> On 30/04/2020, at 4:37 PM, Spencer Graves wrote:
>
> Hello, All:
>
>
> "00install.out" from "R CMD check Ecfun_0.2-4.tar.gz" includes:
>
>
> Error: package or namespace load failed for 'Ecfun':
> .onLoad failed in loadNamespace() for
Hello, All:
"00install.out" from "R CMD check Ecfun_0.2-4.tar.gz" includes:
Error: package or namespace load failed for 'Ecfun':
.onLoad failed in loadNamespace() for 'rJava', details
call: inDL(x, as.logical(local), as.logical(now), ...)
error: unable to load shared object
I accidently changed the second number (y) of a version number (x.y.z, in
release version), from an even number to an odd number. Now I seems can not
update my package anymore. Is anyone know how to change it back to an even
number?
Thanks,
Zongli
On 29 April 2020 at 11:22, peter dalgaard wrote:
| Hum, at least it is not Apple, so maybe you can attach a debugger to the
running process? (gdb -p process_id or something like that --- haven't actually
done it for a decade). Then at least we can get a stack trace and a clue about
where it
Confirmed.
This is fixed now in R-devel and R-patched.
Thanks for the report!
Paul
On 29/04/20 10:05 pm, Gu, Zuguang wrote:
Hi,
In grid 4.0, adding two complex units by `sum()` seems to give wrong results.
In the following example, `u1 + u2` gives the correct result, but `sum(u1, u2)`
I see this is guideline 7 at
https://bioconductor.org/developers/package-guidelines/
I have used LazyData: TRUE so that [pkgname]::[entity] can be used instead
of data(). The
claim that it is "rarely a good thing" and slows down package loading can
be weighed against
convenience. I am not sure
Dear Bioc members,
I have just encountered a warning during the CHECK that some data objects are
used in the documents but not in code (e.g. “Variables with usage in
documentation object ‘ppTree’ but not in code"). They are the demo data, that I
am using only in the examples for demonstrate
Hello Bioconductor maintainers
The core team was made aware of an issue with one of the make orgDb functions
in AnnotationForge:
https://github.com/Bioconductor/AnnotationForge/issues/13
Investigating further, NCBI will no longer be updating the gene2unigene file.
The url has moved to an
Thank you Martin,
Looks like the mMatrix class defined in Matrix is not exported in 3.6.3, maybe
it is now exported in the current R-devel.
In this case I'd rather use a conditional import and definition.
I'll try that route.
Bests,
Renaud
Sent with ProtonMail Secure Email.
‐‐‐ Original
On 29.04.2020 19:19, Sameh M. Abdulah wrote:
I am getting this warning which I need to get rid of.
Found 'exit', possibly from 'exit' (C)
Found 'stderr', possibly from 'stderr' (C)
I am depending on several C-based software that has many calls for 'exit' and
I am getting this warning which I need to get rid of.
Found 'exit', possibly from 'exit' (C)
Found 'stderr', possibly from 'stderr' (C)
I am depending on several C-based software that has many calls for 'exit' and
'stderr'. In this case, how can I avoid this warning?
Thank you Lori!
From: Shepherd, Lori
Sent: Wednesday, April 29, 2020 11:50 AM
To: Cao, Quy ; Herv� Pag�s ;
Nitesh Turaga ; Bioc-devel
Subject: Re: [Bioc-devel] No build report
There are only automatic emails when a package fails. You can get the daily
build reports by going to
There are only automatic emails when a package fails. You can get the daily
build reports by going to
http://bioconductor.org/checkResults/
That has the devel (3.12) and release (3.11) build reports updated daily.
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer
Hi Herve,
I definitely didn't look into the right place. I was waiting for an email about
my package build report. Thank you so much for pointing this out.
Regards,
Quy
-Original Message-
From: Hervé Pagès
Sent: Wednesday, April 29, 2020 11:44 AM
To: Cao, Quy ; Shepherd, Lori
;
Hi Quy,
Are you looking at the right place? Build report for BioC 3.11 is here
https://bioconductor.org/checkResults/3.11/bioc-LATEST/
and I see PERFect there, since at least Monday.
Best,
H.
On 4/29/20 08:01, Cao, Quy wrote:
Dear Lori,
I haven't seen a build report for the package yet.
Dear Lori,
I haven't seen a build report for the package yet. Should I be waiting for a
little bit more?
Thanks,
Quy
From: Shepherd, Lori
Sent: Monday, April 27, 2020 11:00 AM
To: Cao, Quy ; Nitesh Turaga
; Bioc-devel
Subject: Re: No build report
It looks like you had merge conflicts with
Thank you for letting us know. I'll look into your NEWS file and see why it
wasn't included. If there was an issue with formatting I will contact you off
the bioc mailing list.
Cheers,
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Department of
> PS. Simon, I think your explicit comment on mcparallel() & friends is
very helpful for many people and developers. It clearly tells
developers to never use mclapply() as the only path through their
code. I'm quite sure not everyone has been or is aware of this. Now
it's clear. Thank you.
I
Hi,
In grid 4.0, adding two complex units by `sum()` seems to give wrong results.
In the following example, `u1 + u2` gives the correct result, but `sum(u1, u2)`
also `sum(unit.c(u1, u2))` give the wrong results.
```
library(grid)
u1 = 0.4*sum(unit(1, "inch"), unit(1, "mm"))
u2 =
Hum, at least it is not Apple, so maybe you can attach a debugger to the
running process? (gdb -p process_id or something like that --- haven't actually
done it for a decade). Then at least we can get a stack trace and a clue about
where it is looping. Diddling optimization options can also
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