Thank you very much for the help!
This definitely answered my question. I wasn't familiar with pacman before.
For the curious, I've had success generating a .def file from R.dll with
*objdump.exe*, a utility that exists in prior Rtools distributions and
the current ones. With something like the
I installed the 'devel' version of mathjaxr and tested preview_rd()
All seems to be working fine!
Thank you for the quick and useful implementation!
Best,
Olivoto
-Mensagem original-
De: Viechtbauer, Wolfgang (SP)
Enviada em: quarta-feira, 13 de maio de 2020 18:26
Para:
I've added a preview_rd() function to the 'devel' version of mathjaxr:
https://github.com/wviechtb/mathjaxr
If you want to give this a try:
remotes::install_github("wviechtb/mathjaxr")
library(mathjaxr)
Then set the working dir to the root of the package you are working on. Then
use:
Dear all,
I haven't received any feedback so far on my proposal to make "justify"
argument available in stats:::format.ftable
Is this list the appropriate place for this kind of proposal?
I hope this follow-up to my message won't be taken as rude. Of course it's not
meant to be, but I'm not
Hi Toby,
As Gabor pointed out the place where the various levers R CMD check
supports is in the R-internals manual, but there is a link directly to that
section in
https://cloud.r-project.org/doc/manuals/r-release/R-exts.html#Checking-packages
It could perhaps be more prominent, perhaps by
Definitively this is a better way to find the macros.
I think a function like 'preview_rd()' could be useful in mathjaxr
Thanks for all support
Olivoto
-Mensagem original-
De: Duncan Murdoch
Enviada em: quarta-feira, 13 de maio de 2020 16:16
Para: tiagooliv...@gmail.com; 'Viechtbauer,
On 13/05/2020 2:30 p.m., Tiago Olivoto wrote:
Thank you so much! It works!
In my example, I've created a simple helper function, preview_rd()
preview_rd <- function(rdfile){ # without '.rd'
Rd <- file.path(paste("man/", rdfile, ".rd", sep = "")) # specify the .Rd file
you want to preview
Glad to hear that. I might consider adding a function along those lines to
mathjaxr itself, to make it easier to preview files while working on a help
page.
Best,
Wolfgang
>-Original Message-
>From: Tiago Olivoto [mailto:tiagooliv...@gmail.com]
>Sent: Wednesday, 13 May, 2020 20:31
>To:
Thank you so much! It works!
In my example, I've created a simple helper function, preview_rd()
preview_rd <- function(rdfile){ # without '.rd'
Rd <- file.path(paste("man/", rdfile, ".rd", sep = "")) # specify the .Rd file
you want to preview
outfile <- tempfile(fileext = ".html")
See at https://cran.r-project.org/doc/manuals/r-devel/R-ints.html#Tools
Gabor
On Wed, May 13, 2020 at 7:05 PM Toby Hocking wrote:
>
> Can someone please add documentation for that environment variable to
> Writing R Extensions? An appropriate place would be section
>
Can someone please add documentation for that environment variable to
Writing R Extensions? An appropriate place would be section
https://cloud.r-project.org/doc/manuals/r-release/R-exts.html#Suggested-packages
which already discusses _R_CHECK_DEPENDS_ONLY_=true
[[alternative HTML version
Thanks, Duncan. I was about to respond to suggest the same thing.
One way of getting this to work:
Sys.setenv(MATHJAXR.USECDN = "TRUE")
Rd <- file.path("/.Rd") # specify the .Rd file you want to preview
outfile <- tempfile(fileext = ".html")
browseURL(tools::Rd2HTML(Rd, outfile,
On 13/05/2020 12:35 p.m., Tiago Olivoto wrote:
Thanks, Wolfgang and Helmut for the explanations.
When I was trying to use
#'\if{html}{\out{'https://cdn.jsdelivr.net/npm/mathjax@3.0.5/es5/tex-chtml-full.js
#' }}
#'
#'And then typing
#' \ifelse{html}{\out{\[\sqrt{a^2}\]}}{\deqn{\sqrt{a^2}}}
Thanks, Wolfgang and Helmut for the explanations.
When I was trying to use
#'\if{html}{\out{'https://cdn.jsdelivr.net/npm/mathjax@3.0.5/es5/tex-chtml-full.js
#' }}
#'
#'And then typing
#' \ifelse{html}{\out{\[\sqrt{a^2}\]}}{\deqn{\sqrt{a^2}}}
My mgidi.Rd file was produced with
Dear Developers,
Every time there is a release for Bioconductor we (the core team), face an
issue where developers end up pushing code with the "merge conflicts". One of
the reasons why we get the issue "Bad description" file in the build report is
because of a merge which has gone bad and
Thanks for the info! Can confirm now that I tried this (I don't usually use
RStudio). That's an RStudio issue then. My guess is that 'Preview' uses
tools::Rd2HTML() and that indeed won't automatically understand macros coming
from mathjaxr (or any add-on package for that matter). This would be
Hi Wolfgang,
Viechtbauer, Wolfgang (SP) wrote on 2020-05-13 16:53:
Seems like you are using roxygen2. I have little experience with that, as all
my Rd files are 'handcrafted' (plus 100% organic and biodegradable).
As are mine. ;-)
In the HTML-preview of RStudio the LaTeX is indeed not
Seems like you are using roxygen2. I have little experience with that, as all
my Rd files are 'handcrafted' (plus 100% organic and biodegradable).
But what specifically do you mean by "when I try to preview the current
document as HTML"? Is this some particular functionality of roxygen2 /
Dear Wolfgang,
Thank you so much for the awesome package
I've installed mathjaxr and it worked.
I have some more questions, with a short example bellow
I created an equation in my mgidi.R file as follows
#' \loadmathjax
#' \mjsdeqn{MGIDI_i = \sum\limits_{j = 1}^f}
And then I ran
Le Tue, May 12, 2020 at 10:18:24AM -0700, Hervé Pagès a écrit :
>
> Note that the GPos() constructor is NOT the generator function returned by
> the setClass() statement that defines the GPos class. It's a constructor
> function defined in the GenomicRanges package and it implements a
>
There is lots of documentation on how to achieve this.
Most specifically for pushing changes to the RELEASE_3_11 branch following the
documentation
http://bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
Lori Shepherd
Bioconductor Core Team
Roswell Park Comprehensive
Hi Chris,
On 12 May 2020 at 18:00, Chris Paciorek wrote:
| 1) Does anyone happen to know why this problem with Eigen is occurring
| with clang11?
Compilers change. Languages changes. Requirements change.
Many of us have been there (e.g. witness the "excitement" about gcc-10 last
December
Hi.
Thanks for your help solving this issue. Could you please let me know how I
can fix the bug in the specific BioC version (3.11). How could I push my
current updated code into this specific version?
Thanks in advance.
I am looking forward to hearing from you soon.
Kind regards,
Juan
El
Yes looking at the links further it is a legacy version.
The one that resolves to a workflow page if you look closely is when 3.11 was
in development phase
https://bioconductor.org/packages/release/workflows/html/BgeeCall.html
While the software page is the current release.
I'm not exactly
Hello,
For Bioconductor 3.11 I asked if it was possible to move BgeeCall from
workflow section to software section.
The package is now present in the software section. Thank you.
When I go to this page :
https://bioconductor.org/help/search/index.html?q=bgeecall/
Hi,
The maintainer is already aware of this error.
I reported it several months ago
https://github.com/colearendt/xlsx/issues/132 and is reported multiple
times (issues 154, 156, 159)
There is a fix on the github version of the package but the maintainter
hasn't updated the CRAN version yet.
Dear Olivoto,
There is a package now for this purpose:
https://cran.r-project.org/package=mathjaxr
https://github.com/wviechtb/mathjaxr
Best,
Wolfgang
>-Original Message-
>From: R-package-devel [mailto:r-package-devel-boun...@r-project.org] On
>Behalf Of Tiago Olivoto
>Sent: Wednesday,
Dear all,
I'm not sure if this is the correct place to make this question, but here I
am.
I'm trying to use MathJax for html help files in my package metan
(https://cran.r-project.org/package=metan)
I have success with the following approach:
Including the following call
Thanks, fixed.
Tomas
On 5/13/20 5:14 AM, Dirk Eddelbuettel wrote:
On 12 May 2020 at 19:59, Hervé Pagès wrote:
| While reading about the new 'recycle0' argument of paste/paste0, I
| spotted a mysterious "cd" floating in the air in the man page:
|
|recycle0: ‘logical’ indicating if
A quick heads-up: We intend to have a 4.0.1 release some time early June,
possibly 6/6.
For the R Core Team
Peter D.
--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email:
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