Re: [Bioc-devel] credential not recognized when git clone my packages

2021-01-11 Thread Zhu, Lihua (Julie)
Thank you very much, Lori and Nitesh! That fixed it! It worked before the new release and I automatically thought that something has changed the behavior since the release. Now I am thinking back, it's because that I has accidently overwritten the id_isa file recently, which leads to the

Re: [Bioc-devel] [External] Re: Bioconductor Package Error: LRcellTypeMarkers

2021-01-11 Thread Ma, Wenjing
Thank you for your quick response! I will go check the comments under the issue. Sincerely, Wenjing From: Kern, Lori Sent: Monday, January 11, 2021 2:28 PM To: Ma, Wenjing ; bioc-devel@r-project.org Subject: [External] Re: Bioconductor Package Error:

Re: [Bioc-devel] Bioconductor Package Error: LRcellTypeMarkers

2021-01-11 Thread Kern, Lori
Thank you for the detailed report. I will go on the builder to have a look. We recently updated the devel builders of R including the mac so I'm hoping it has resolved itself. I will post more on your open issue and have informed your reviewer to look at the package in the meantime. Cheers,

[Bioc-devel] Bioconductor Package Error: LRcellTypeMarkers

2021-01-11 Thread Ma, Wenjing
Dear Bioconductor Team, I have been working on passing the review process of my package LRcellTypeMarkers (https://github.com/Bioconductor/Contributions/issues/1818). I want to post my question here and see if anyone else has also encountered the same issue. Previously, I got this error from

Re: [Bioc-devel] credential not recognized when git clone my packages

2021-01-11 Thread Nitesh Turaga
Hi Julie, Lori is correct, it seems you've never activated your account on BiocCredentials which is linked to julie@umassmed.edu. Please activate your account, add new SSH keys and you will gain access to your package. Best, Nitesh On 1/11/21, 2:51 AM, "Bioc-devel on behalf of Kern,

Re: [Bioc-devel] credential not recognized when git clone my packages

2021-01-11 Thread Kern, Lori
Are you on a different computer? You could always create and add additional public keys for your package through the git credentials app. https://git.bioconductor.org/BiocCredentials/ If you have never activated the account, please activate first:

Re: [Rd] URL checks

2021-01-11 Thread Martin Maechler
> Viechtbauer, Wolfgang (SP) > on Mon, 11 Jan 2021 10:41:03 + writes: >>> Viechtbauer, Wolfgang (SP) >>> on Fri, 8 Jan 2021 13:50:14 + writes: >> >> > Instead of a separate file to store such a list, would it be an idea >> to add versions of the

Re: [Rd] URL checks

2021-01-11 Thread Viechtbauer, Wolfgang (SP)
>> Viechtbauer, Wolfgang (SP) >> on Fri, 8 Jan 2021 13:50:14 + writes: > >> Instead of a separate file to store such a list, would it be an idea >to add versions of the \href{}{} and \url{} markup commands that are skipped >by the URL checks? >> Best, >> Wolfgang > >I

Re: [Rd] URL checks

2021-01-11 Thread Martin Maechler
> Viechtbauer, Wolfgang (SP) > on Fri, 8 Jan 2021 13:50:14 + writes: > Instead of a separate file to store such a list, would it be an idea to add versions of the \href{}{} and \url{} markup commands that are skipped by the URL checks? > Best, > Wolfgang I think

Re: [Rd] URL checks

2021-01-11 Thread Viechtbauer, Wolfgang (SP)
Instead of a separate file to store such a list, would it be an idea to add versions of the \href{}{} and \url{} markup commands that are skipped by the URL checks? Best, Wolfgang >-Original Message- >From: R-devel [mailto:r-devel-boun...@r-project.org] On Behalf Of Spencer >Graves