Re: [Rd] Compiling R-devel on older Linux distributions, e.g. RHEL / CentOS 7

On 08/02/2023 00:13, Gábor Csárdi wrote: As preparation for the next release, I am trying to compile R devel on RHEL / CentOS 7, which is still supported by RedHat until 2024 June. There are two issues. One is that the libcurl version in CentOS 7 is quite old, 7.29.0, and R devel now requires

[Rd] Compiling R-devel on older Linux distributions, e.g. RHEL / CentOS 7

As preparation for the next release, I am trying to compile R devel on RHEL / CentOS 7, which is still supported by RedHat until 2024 June. There are two issues. One is that the libcurl version in CentOS 7 is quite old, 7.29.0, and R devel now requires 7.32.0, since 83715 about a week ago. This

[Bioc-devel] News: BioC2023 abstract submission is now open!

Abstract submission is now open for the BioC2023 conference in Boston August 2-4 https://bioc2023.bioconductor.org/ Submit an abstract by March 19 for * Short talk * Workshop * Package demo * Birds-of-a-feather session * Poster Submit here

Re: [R-pkg-devel] R OpenCL on an AMD GPU

Quirin, this is a contributed package question, so you should either use the GitHub issues (https://github.com/s-u/OpenCL/issues) for the package or contact the maintainer (me). But before you do so, you have to provide a lot more details including exact code you used and the full output of

Re: [Bioc-devel] TiSA awaiting moderation - 1 month

We apologize for the delay. Normally we try to look at packages within 3-4 weeks so agreed that this is a little delayed getting back to. We will try to reassess the package shortly. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department

[Bioc-devel] TiSA awaiting moderation - 1 month

Hello all, I submitted a package for bioconductor approximately two months ago (link to issue: https://github.com/Bioconductor/Contributions/issues/2883) and got quick feedback at the time with the suggestion to implement SummarizedExperiments. I have since performed these changes and commented

[R-pkg-devel] R OpenCL on an AMD GPU

Hi, I am trying to set up the CRAN package "OpenCL" to run on a Windows 10 machine with an AMD GPU (Radeon 7900 XTX). I installed the AMD drivers (which carry the OpenCL.dll) and the installation of OpenCL in R didnt work. So I also downloaded the AMD SDK to set up the environment variables

Re: [Rd] Unnecessary note when import only used in arg definition

I've submitted a bug report (https://bugs.r-project.org/show_bug.cgi?id=18465) about this, along with a patch to fix it. Duncan Murdoch On 06/02/2023 9:42 a.m., Antoine Fabri wrote: Dear r-devel, When a package is only used in an argument definition, e.g : f <- function(test =

Re: [Bioc-devel] name for new BioC package

If you choose to introduce a second package, I would suggest immediately deprecating MoonlightR. The two versions co-exist for a development and release cycle for comparison / opportunity for users to adjust, and then there is only MoonlightR2. This avoids confusion for new users. You can

Re: [Bioc-devel] name for new BioC package

Dear all, thanks for your input just to answer on your different points: @Kevin Coombes I agree it can be annoying - we don't intend to heavily change the API, we mostly want to add functionality and refactoring some of the internals (including basic

Re: [R-pkg-devel] How to update "SystemRequirements: C++11"?

On Tue, 7 Feb 2023 at 01:50, Avraham Adler wrote: > > On Tue, Feb 7, 2023 at 12:10 AM Iñaki Ucar wrote: > > > > On Tue, 7 Feb 2023 at 00:09, Avraham Adler wrote: > > > > > > "If a package does have a src/Makevars[.win] file then also setting > > > the make variable ‘CXX_STD’ there is

Re: [R-pkg-devel] How to update "SystemRequirements: C++11"?

This might be helpful. Using autoconf and ax_cxx_compile_stdcxx ( https://www.gnu.org/software/autoconf-archive/ax_cxx_compile_stdcxx.html) in package_root/tools/m4: configure.ac AC_PREREQ(2.64) AC_INIT(yourpackagename, 1.0, y...@email.com) AC_CONFIG_SRCDIR([src/main.cpp])