Re: [Bioc-devel] Omada package failing due to removed dependency

2024-04-01 Thread Sokratis Kariotis
Dear all, I am getting some warnings that the Omada package is failing. If I am correct I need to make some changes to both the devel and Release_3_18 branches. Because I am using a new laptop, could you let me know how to make the necessary changes to fix both branches ( I mean how to connect

Re: [R-pkg-devel] Order of repo access from options("repos")

2024-04-01 Thread Uwe Ligges
Untested: install.packages() calls available.packages() to find out which packages are available - and passes a "filters" argument if supplied. That can be a user defined filter. It should be possible to write a user defined filter which prefers the packages in your local repo. Best, Uwe

[Bioc-devel] SVMDO devel branch CITATION PROBLEM

2024-04-01 Thread erhanozer19 via Bioc-devel
Hello, In the Bioconductor, the release version page of SVMDO includes the CITATION information, provided by the CITATION file in the package, but it does not appear in the development version Bioconductor page of SVMDO. I checked the Bioconductor Code Browse. Both release and development

Re: [Rd] Question regarding .make_numeric_version with non-character input

2024-04-01 Thread Kurt Hornik
> Andrea Gilardi via R-devel writes: Thanks: should be fixed now in the trunk. Best -k > Thank you very much Dirk for your kind words and for confirming the bug. > Next week I will open a new issue on Bugzilla adding the related patch. > Kind regards > Andrea > On 29/03/2024 20:14, Dirk