Re: [R-pkg-devel] Resubmitting an archived package

If you run a spell checker before you submit then it helps if you put in your cran-comments.md file the list of words flagged and that all of them are correct. This makes it just a little easier for CRAN. -Roy > On Jun 12, 2024, at 3:35 PM, Ben Bolker wrote: > > As far as I know these

Re: [R-pkg-devel] Resubmitting an archived package

As far as I know these are all harmless. * the first NOTE is for CRAN consumption * the rest are false positives The spell-checking machinery used in package checking is under-documented. There are some useful references here https://github.com/r-lib/usethis/issues/1466

Re: [R-pkg-devel] Packages required but not available

This is actually an issue that was just fixed. package:vctrs has an error when installing under r86723 because it creates delayed bindings at package install time that cannot be restored at package load time. It may be a small while before the newest R devel version is in use by the CRAN farm,

[R-pkg-devel] Resubmitting an archived package

Hello everyone, Recently, my R package {smile} was archived due to NOTES. At the time, I was in the final stages of my PhD and unfortunately, I couldn't address the issue in time to prevent the package from being archived. Long story short, I fixed the issues, and now the `R CMD check --as-cran`

[R-pkg-devel] Packages required but not available

Dear all I have just submitted a new version of the package SchoolDataIT On r-devel-linux-x86_64-debian-gcc I got this error

Re: [Rd] Fields used by available.packages

> Lluís Revilla writes: > Yes, I think that would be enough.  Thanks. And of course add documentation ... Will try to get this in in the next few days. Best -k > Thank you, Kurt! > Lluís > On Wed, 12 Jun 2024 at 16:35, Kurt Hornik wrote: >> Lluís Revilla writes: > Lluis,

Re: [Rd] Fields used by available.packages

Yes, I think that would be enough. Thank you, Kurt! Lluís On Wed, 12 Jun 2024 at 16:35, Kurt Hornik wrote: > > Lluís Revilla writes: > > Lluis, > > So in available.packages() I could replace > > if (is.null(fields)) > fields <- requiredFields > else { >

Re: [Rd] Fields used by available.packages

> Lluís Revilla writes: Lluis, So in available.packages() I could replace if (is.null(fields)) fields <- requiredFields else { stopifnot(is.character(fields)) fields <- unique(c(requiredFields, fields)) } by someting like if(is.null(fields))

Re: [Bioc-devel] [EXTERNAL] Re: Deeptarget package

Dear Kristian, This is very important question. Thanks for checking in. The manuscript is under review, and I believe that we already agreed and followed to Depmap’s policies. The input data we used in this package here contains only a subset of the data we used in the manuscript, and it is

Re: [Bioc-devel] Error in methylclockData package

I can't reproduce either of these and when I check the resources on the builders they load successfully so doesn't appear to be a caching issue. I would expect them to clear up on the next run of the builders. Let's see what happens on the next run and if they continue to error I can look

Re: [Bioc-devel] Error in methylclockData package

Dear BioC Team, I am receiving a similar error from the MouseThymusAgeing package: > smart.data <- MouseSMARTseqData(samples = "day1") see ?MouseThymusAgeing and browseVignettes('MouseThymusAgeing') for documentation loading from cache field not found in version - adding see ?MouseThymusAgeing

[Bioc-devel] Error in methylclockData package

Dear Bioconductor team, I have seen that the methylclockData package gives an error when loading the EH6082 resource, the error is: get_TestDataset() see ?methylclockData and browseVignettes('methylclockData') for documentation loading from cache Warning in grepl("RD[ABX][2-9]\n", magic) :

Re: [Bioc-devel] Deeptarget package

Dear Nguyen, I have a question related to the data that you use and I just bring it up here since I would also like to ask the bioconductor developers, how this can be handled properly. The depmap.org portal has a clear "Terms and Condition" statement that you need to