ceVector() also emits the same error above
since it uses the same code path.
Thanks,
Kevin
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Un
packages the advice
is simple: stop using them.
Best,
luke
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provided.
Best,
luke
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me time and coordination
between R-core and maintainers of affected packages.
Once things have gelled a bit more I hope to turn this into a blog
post that will include some examples of moving non-API entry point
uses into compliance.
Best,
luke
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here
I'm in over my head and hoping for insight into whether this
problem
should be resolved by changing R, Rcpp, or downstream Rcpp packages ...
cheers
Ben Bolker
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uot; Can we leave it at that please?
luke
On Fri, Jun 7, 2024 at 7:30 AM luke-tierney--- via R-devel
wrote:
On Fri, 7 Jun 2024, Steven Dirkse wrote:
You don't often get email from sdir...@gams.com. Learn why this is important
Thanks for sharing this overview of an interesting and much-ne
reminding you when we hit some of the
tougher challenges down the road :-)
Best,
luke
On Thu, Jun 6, 2024 at 9:47 AM luke-tierney--- via R-devel
wrote:
This is an update on some current work on the C API for use in R
extensions.
The internal R implementation makes use
n.
Best,
luke
-Steve
On Thu, Jun 6, 2024 at 10:47 AM luke-tierney--- via R-devel
wrote:
This is an update on some current work on the C API for use in R
extensions.
The internal R implementation makes use of tens of thousands of
C
entry points. On Linux a
e I hope to turn this into a blog
post that will include some examples of moving non-API entry point
uses into compliance.
Best,
luke
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On Mon, 13 May 2024, Ivan Krylov wrote:
[You don't often get email from ikry...@disroot.org. Learn why this is
important at https://aka.ms/LearnAboutSenderIdentification ]
On Mon, 13 May 2024 09:54:27 -0500 (CDT)
luke-tierney--- via R-devel wrote:
Looks like I added that warning 22
On Sat, 11 May 2024, Peter Langfelder wrote:
On Sat, May 11, 2024 at 9:34 AM luke-tierney--- via R-devel
wrote:
On Sat, 11 May 2024, Travers Ching wrote:
The following code snippet causes R to hang. This example might be a
bit contrived as I was experimenting and trying to understand
would
create a cycle and throw an error if it would. Need to think a bit
about exactly where the check should go.
Best,
luke
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ed via a namespace (and not attached):
[1] compiler_4.5.0
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D
hat stands now. But there was and is no viable option other than to
agree to disagree. There is really no upside to re-litigating this
now.
Best,
luke
Hadley
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ate is not
realistic. The only way that would work reliably is if the list could
be programmatically generated, for example by parsing installed
headers for declarations and caveats as above. Which would be possible
with changes like the ones listed above.
Best,
luke
Hadley
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http://www.mjskay.com/
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` argument to library() has been a
*relatively* recent addition {given the 25+ years of R history}:
It was part of the extensive new features by Luke Tierney for
R 3.6.0 [r76248 | luke | 2019-03-18 17:29:35 +0100], with NEWS entry
• library() and require() now allow more control
out.
Best,
June
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ks, one early and
the other late. The early one is explicitly letting this one through
and shouldn't. So a one line change would address this particular
problem. But it would be a good idea to review why we the late checks
are needed at all and maybe change that. I'll look into it.
Best,
l
comparison (>) is not possible for language types
Best,
luke
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o.
Best,
luke
Duncan Murdoch
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es) and found 70%
of usages reading the full file.
[5] repro:
https://gist.github.com/MichaelChirico/247ea9500460dca239f031e74bdcf76b
requires GitHub PAT in env GITHUB_PAT for API permissions.
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...but that's unavoidable when looking at frozen object contents
instead of their live memory layout.
If you're interested, here's the development version of the package:
install.packages('depcache',contriburl='https://aitap.github.io/Rpackages')
ese fail with the environment set to 'error' but not to
'none', so they are getting a value from somewhere else that may or
may not be right.
Affected as revdeps of optmatch:
- cobalt
- htetree
- jointVIP
- MatchIt
- PCAmatchR
- rcbalance
- rcbsubset
- RItools
- stratamat
names
while constructing error messages? Other languages (like Lua or SQLite)
provide a special printf specifier (typically %q) to create
quoted/escaped string representations, but we're not yet at the point
of providing a C-level printf implementation.
Not clear it is worth it. But the si
nction by `$`-subsetting the
defining environment, as shown above?
Cheers,
Konrad
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On Sat, 17 Sep 2022, Kurt Hornik wrote:
luke-tierney writes:
On Thu, 15 Sep 2022, Duncan Murdoch wrote:
The author of this Stackoverflow question
https://stackoverflow.com/q/73722496/2554330 got confused because a typo in
his code didn't trigger an error in normal circumstances, but i
in
https://bugs.r-project.org/show_bug.cgi?id=18269
Best,
luke
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241 Schaef
stly through dependencies on a few packages).
(Perhaps this topic could be a better fit for R-help.)
R-devel is the right place for this.
Best,
luke
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Departm
able but not really documented or enabled? Clarifications welcome,
otherwise 'time will tell' as usual.
Thanks, Dirk
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b.com/wch/r-source/blob/0a31ab2d1df247a4289efca5a235dc45b511d04a/src/library/utils/R/objects.R#L402-L405
[3] https://cran.r-project.org/doc/manuals/R-lang.html#warning
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s,
Andreas
P.S. I had a hard time to get the indentation right in the patch due the mix of
tabs and spaces. Sorry, if I screwed this up.
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cases, and / or do such validity
checks already during serialization { <-> saveRDS() here } ?
.. Such questions then really are for those who understand more than
me about (de)serialization in R, its performance bottlenecks etc.
Given the speed impact we should probably have such checks *optional*
nd I am not sure if there might be situations in which the assumptions
are violated, even though SET_STRING_ELT() and installAttrib() do enforce
them.
Best regards,
Andreas
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based tool chain may be a better investment of time.
Best,
luke
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the default is to byte
compile on source install, or explicitly calling compiler::cmpfun are
options.
Best,
luke
Duncan Murdoch
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24
ault put the
expression that would produce the formula into the call (i.e. stripped
out the two attributes).
But I do not know if there is logic in base R code, never mind package
code, that takes advantage of the attributes on the formula expression
in if they are found. formula() looks in
ct' must deparse to a single character string
That is this works:
L |>
# gsub(pattern = " ", replacement = "") |>
gsub(pattern = " ", replacement = "") |>
textConnection() |>
read.dcf()
## Variable Length
## [1,] &quo
Iñaki Úcar
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review what you are doing and to try to revise your code
to work within the API. If you feel there are features missing in the
API then you can suggest additions on this mailing list or bugzilla.
Best,
luke
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ing along.
Is there a plan to resolve this? Any suggestions for maybe a C++ workaround
until then? Or an alternative performant serialization solution?
Best,
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these functions to be obscured in the first place?
Best regards,
Konrad,
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;> package
>>>>> that demonstrates this:
>>> https://github.com/gaborcsardi/redfish
>>>>>
>>>>> The R callback in this package calls
>>> `loadNamespace("Matrix")`, but
>&
omething wrong in the ALTREP code
(see
> >
https://github.com/gaborcsardi/redfish/blob/main/src/test.c),
and it
> > is not actually a bug.
> >
> > Thanks,
> > Gabor
> >
> > ___
rdi/redfish/blob/main/src/test.c), and it
is not actually a bug.
Thanks,
Gabor
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documented as they may be, or even subject to change, I think the
R internals are much more reliable that this.
Best wishes,
Adrian
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iable that this.
Best wishes,
Adrian
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ted]]
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dd@rob:~$ )
Dirk
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A
user system elapsed
0.005 0.000 0.005
edd@rob:~$ )
Dirk
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(serialize(sys.frames(), NULL)))
crash_dumps[["last.dump"]] <- dump
assignInMyNamespace("crash_dumps", crash_dumps)
}
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ump <- lapply(1:2, function(i) unserialize(serialize(sys.frames(), NULL)))
crash_dumps[["last.dump"]] <- dump
assignInMyNamespace("crash_dumps", crash_dumps)
}
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ulia> x = 2
2
julia> 1 |> x -> x + 1 |> y -> x + y
3
julia> ( 1 |> x -> x + 1 ) |> y -> x + y
4
Even though proper use of parentheses can work around these issues,
the likelihood of making mistakes that are hard to track down is too
high. So we will d
e of parentheses can work around these issues,
the likelihood of making mistakes that are hard to track down is too
high. So we will disallow the use of bare function expressions on the
right hand side of a pipe.
Best,
luke
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mespace (and not attached):
[1] compiler_4.1.0
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LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.0.3
/Arne
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which you probably want. But then
baz <- bar(runif(1))
10 |> baz
(not currently allowed) will not be the same as what you would want from
10 |> bar(runif(1))
which leads to a different kind of inconsistency, doesn't it?
-Deepayan
___
code less compact and more
readable. Every bug fix or new feature in the survival package now adds more
lines of comments or other documentation than lines of code. If I have to
puzzle out what a line does, what about the poor sod who inherits the
maintainance?
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2:3, lapply(.[2:3], \(col) lapply(col, \(x)
eval(parse(text = x)
#
# dplyr/magrittr
library(dplyr)
DF <- "myfile.csv" %>%
readLines %>%
gsub(r'{(c\(.*?\)|integer\(0\))}', r'{"\1"
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or problem with the magrittr pipe). Using
'_'
fulfills all of these criteria since '_' can not clash with any variable
in
the environment.
Denes
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with any variable in
the environment.
Denes
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Tomas
Best regards,
Jan Gorecki
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_
ive("c")
```
I believe these should either fail, or be vectorized, probably the former.
Thanks,
Antoine
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ting Bugs' link on the R home page https://www.r-project.org/
Best,
luke
Best,
Jiefei
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Fax:
319-335-3017
> Actuarial Science
> 241 Schaeffer Hall email:
luke-tier...@uiowa.edu
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http://www.stat.uiowa.edu
>
> __
> R-devel@r-proje
mitive("c")
get0(c("c", "d"))
#> function (...) .Primitive("c")
```
I believe these should either fail, or be vectorized, probably the former.
Thanks,
Antoine
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class(x)
new_classes <- c("AsIs", x_class)
attr(new_classes, "package") <- attr(x_class, "package")
structure(x, class=new_classes)
} else {
`class<-`(x, unique.default(c("AsIs", oldClass(x
}
}
version 4.0.2 (2020-06-22)
> and Windows with R Under development (unstable) (2020-09-03 r79126).
>
> Here is the link to simplemmap:
> https://github.com/ALTREP-examples/Rpkg-simplemmap
>
> Best,
> Jiefei
>
> [[alternative HTML version deleted]]
>
> ___
This issue can be reproduced on Ubuntu with R version 4.0.2 (2020-06-22)
and Windows with R Under development (unstable) (2020-09-03 r79126).
Here is the link to simplemmap:
https://github.com/ALTREP-examples/Rpkg-simplemmap
Best,
Jiefei
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On Tue, 8 Sep 2020, Martin Maechler wrote:
luke-tierney
on Tue, 8 Sep 2020 09:42:43 -0500 (CDT) writes:
> On Tue, 8 Sep 2020, Martin Maechler wrote:
>>>>>>> Martin Maechler
>>>>>>> on Tue, 8 Sep 2020 10:40:24 +0200 writes:
>>
nal(inspect(y)) is bugous (probably prints the double as an integer):
It's a '%ld' that probably needs to be '%lld' for Windows. Will fix
sometime soon.
Best,
luke
> y <- -1e3:2.2e9 ; .Internal(inspect(y))
@0x195c0178 14 REALSXP g0c0 [REF(65535)] -1000
t for that case:
On Windows, things are fine as long as they remain (compacted
aka 'ALTREP') INTSXP:
> y <- -1e3:2e9 ;.Internal(inspect(y))
@0x0a285648 13 INTSXP g0c0 [REF(65535)] -1000 : 20 (compact)
> y <- -1e3:2.1e9 ;.Internal(inspect(y))
@0x19925930
happy to be proved wrong.
Best,
luke
Hadley
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level varies;
some might be resolved with a small amount of R code; others might
need more extensive changes at the C level.
Best,
luke
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lt;- k[i]; names(x4) <- NULL
What kind of magick is that?
It hits us when we upgrade from 3.5 (when serialization changed) and had
impact on parallelization (cause serialized objects were bigger).
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v(), b=new.env())
R> unique(l)
> [[1]]
> [[2]]
> Best -k
Ditto here; also your (Jan) 2nd example works fine.
So, you must have loaded some (untidy) packages / code which redefine
standard base R behavior ?
Martin
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BCO Software
wdunlap tibco.com
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ote(x^a), env1)
> numericDeriv(quote(x^a), "a", env1)
> eval(quote(x^a), env1)
> env1$a
>
> Thank you!
> Raimundo Neto
>
> [[alternative HTML version deleted]]
>
> __________
k you!
Raimundo Neto
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University of Iowa
loc and free to Rm_... counterparts in lockstep?
(I assume that is where dlmalloc comes in?)
Anyways, does it actually work to change free() to Free()? If so, then all this
post mortem analysis is rather a moot point.
-pd
--
Luke Tierney
Ralph E. Wareham Professor of Mathematical Sciences
Uni
e' to 'Free'.
This has nothing to do with the Windows build or installation. Nothing
has changed in the windows build procedure between 4.0.0 and 4.0.1.
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esponding 'free' to 'Free'.
This has nothing to do with the Windows build or installation. Nothing
has changed in the windows build procedure between 4.0.0 and 4.0.1.
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f SET_STRING_ELT() must be a 'CHARSXP' not a 'NULL'
Regards
Thomas
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http
onflictError = handle_conflicts)
library(dplyr)
```
An IDE could provide a more sophisticated interface, like a dialog
allowing separate choices for each conflict. But this is best left up
to the IDE or the user.
The one addition to library that might be worth considering is to
provide a restart fo
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