Re: [Rd] install.packages now intentionally references .Rprofile?

2009-05-29 Thread McGehee, Robert
boun...@r-project.org] On Behalf Of Heather Turner Sent: Friday, May 22, 2009 6:13 AM To: Mark Kimpel Cc: Prof Brian Ripley; r-de...@stat.math.ethz.ch Subject: Re: [Rd] install.packages now intentionally references .Rprofile? I had a similar problem when moving to R-2.9.0 as my .Rprofi

Re: [Rd] install.packages now intentionally references .Rprofile?

2009-05-22 Thread Heather Turner
I had a similar problem when moving to R-2.9.0 as my .Rprofile called update.packages(). The solution was to use if(interactive()) { utils:::update.packages(ask = FALSE) } HTH, Heather Mark Kimpel wrote: > This was my original post, with the code example only slightly modified by > Mart

Re: [Rd] install.packages now intentionally references .Rprofile?

2009-05-21 Thread Mark Kimpel
This was my original post, with the code example only slightly modified by Martin for clarity. Prior to R-2.9.0, this repeated downloading did not occur, the code worked as intended. In fact, if memory serves me correctly, it even worked at least during the first 3 months of R-2.0.0 in its developm

Re: [Rd] install.packages now intentionally references .Rprofile?

2009-05-20 Thread Prof Brian Ripley
On Wed, 20 May 2009, Martin Morgan wrote: A post on the Bioconductor mailing list https://stat.ethz.ch/pipermail/bioconductor/2009-May/027700.html suggests that install.packages now references .Rprofile (?), whereas in R-2-8 it did not. Is this intentional? Yes. And in fact it did in earli

[Rd] install.packages now intentionally references .Rprofile?

2009-05-20 Thread Martin Morgan
A post on the Bioconductor mailing list https://stat.ethz.ch/pipermail/bioconductor/2009-May/027700.html suggests that install.packages now references .Rprofile (?), whereas in R-2-8 it did not. Is this intentional? The example is, in .Rprofile library(utils) install.packages("Biobase",