[Rd] Startup problem in 2.0.1 with install to /opt/R (PR#7437)

2004-12-20 Thread Stephen . Harker
Full_Name: Stephen Harker Version: 2.0.1 OS: Linux ppc YDL 3.01 Submission from: (NULL) (130.194.13.106) I have made R 2.0.1 using YellowDog Linux 3.0.1 (kernel 2.6.7) on a powerpc machine. This is to replace R 1.9.1. It makes without an error. However, when I do `make check' towards the end I

RE: mono fonts (was RE: [Rd] RE: [R] SAS or R software)

2004-12-20 Thread Warnes, Gregory R
> > > > I've tested values of cex. Anything above 2.1249 seems to > segfault. > > > The X11 device works pretty hard to find a font to use and if > it really > can't find anything it should throw an error, not segfault. Are you > able to debug this and see where it is failing? I haven'

Re: mono fonts (was RE: [Rd] RE: [R] SAS or R software)

2004-12-20 Thread Paul Murrell
Hi Warnes, Gregory R wrote: Ah, I'm using Exceed Hummingbird 7.1 as the X server It does have fixed width fonts, and it is happy with variable width fonts up to this extreme A little more fiddling shows that this succeds with a linux based X11 server, and that even plot(1,1) par(fami

RE: mono fonts (was RE: [Rd] RE: [R] SAS or R software)

2004-12-20 Thread Warnes, Gregory R
Ah, I'm using Exceed Hummingbird 7.1 as the X server It does have fixed width fonts, and it is happy with variable width fonts up to this extreme A little more fiddling shows that this succeds with a linux based X11 server, and that even plot(1,1) par(family="mono",ce

RE: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Warnes, Gregory R
What version of GCC? We user GCC 3.4.0. -G > -Original Message- > From: Marc Schwartz [mailto:[EMAIL PROTECTED] > Sent: Monday, December 20, 2004 4:30 PM > To: Warnes, Gregory R > Cc: Paul Murrell; Jain, Nitin; R-Devel; Frank E Harrell Jr > Subject: RE: [Rd] RE: [R] SAS or R software >

mono fonts (was RE: [Rd] RE: [R] SAS or R software)

2004-12-20 Thread Prof Brian Ripley
[Please update the subject line, folks!] We need to know the device in use here ... and only a few support this mechanism. If it is X11(), I suspect the problem is in what fonts are available, since cex=8 is pretty extreme. So most likely you need to contribute a patch based on debugging on yo

RE: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Marc Schwartz
On Mon, 2004-12-20 at 16:31 -0500, Warnes, Gregory R wrote: > What version of GCC? > > We user GCC 3.4.0. > > -G $ gcc --version gcc (GCC) 3.4.2 20041017 (Red Hat 3.4.2-6.fc3) Copyright (C) 2004 Free Software Foundation, Inc. Marc __ [EMAIL PROTECTE

RE: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Marc Schwartz
On Mon, 2004-12-20 at 16:13 -0500, Warnes, Gregory R wrote: > Yes, par(family="mono") would work, except that I get R segfaults from this > sequence: > > > > > plot.new() > > par(family="mono") > > par(cex=8) > > strheight("foo") > > Process R segmentation fault (core dumped) at Mon Dec 20 16:07

RE: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Jeff Gentry
> Yes, par(family="mono") would work, except that I get R segfaults from this > sequence: > > plot.new() > > par(family="mono") > > par(cex=8) > > strheight("foo") > Process R segmentation fault (core dumped) at Mon Dec 20 16:07:56 2004 > on R 2.0.1 (2004-11-15), Red Hat Enterprise Linux AS release

RE: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Warnes, Gregory R
Yes, par(family="mono") would work, except that I get R segfaults from this sequence: > > plot.new() > par(family="mono") > par(cex=8) > strheight("foo") Process R segmentation fault (core dumped) at Mon Dec 20 16:07:56 2004 on R 2.0.1 (2004-11-15), Red Hat Enterprise Linux AS release 3 In m

Re: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Marc Schwartz
On Tue, 2004-12-21 at 08:40 +1300, Paul Murrell wrote: > Hi > > > Warnes, Gregory R wrote: > > > >>-Original Message- > >>From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] > > > > ... > > > >>This is neat Greg. Just installed the latest gregmisc. Do you > >>automatically used fixed

Re: [Rd] R and Gnumeric?

2004-12-20 Thread Marc Schwartz
On Mon, 2004-12-20 at 20:36 +0100, Peter Dalgaard wrote: > Marc Schwartz <[EMAIL PROTECTED]> writes: > > > I was just curious if anyone from R Core might comment on the nature and > > scope of the cooperation, as I could not find anything at the Gnumeric > > web site on this. > > > > Does this su

Re: [Rd] RE: [R] SAS or R software

2004-12-20 Thread Paul Murrell
Hi Warnes, Gregory R wrote: -Original Message- From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] ... This is neat Greg. Just installed the latest gregmisc. Do you automatically used fixed width fonts for this, for alignment of columns? Unfortunately, I haven't found any way to selec

Re: [Rd] R and Gnumeric?

2004-12-20 Thread Peter Dalgaard
Marc Schwartz <[EMAIL PROTECTED]> writes: > I was just curious if anyone from R Core might comment on the nature and > scope of the cooperation, as I could not find anything at the Gnumeric > web site on this. > > Does this suggest that perhaps code sharing and/or some level of > validation is ta

Re: [Rd] R and Gnumeric?

2004-12-20 Thread Marc Schwartz
On Mon, 2004-12-20 at 12:31 -0500, Simon Urbanek wrote: > On Dec 20, 2004, at 10:20 AM, Marc Schwartz wrote: > > > I was just curious if anyone from R Core might comment on the > nature > > and > > scope of the cooperation, as I could not find anything at the > Gnumeric > > web site on this. > >

Re: [Rd] R, fptex, MikTex

2004-12-20 Thread Uwe Ligges
Gabor Grothendieck wrote: According to the following Windows package building info: http://www.murdoch-sutherland.com/Rtools/ fptex is easier to install with the R package building tools than MikTex. I have been using MikTex but was thinking of switching over to fptex to simplify my setup. M

[Rd] R, fptex, MikTex

2004-12-20 Thread Gabor Grothendieck
According to the following Windows package building info: http://www.murdoch-sutherland.com/Rtools/ fptex is easier to install with the R package building tools than MikTex. I have been using MikTex but was thinking of switching over to fptex to simplify my setup. My concern is that I ha

Re: [Rd] R and Gnumeric?

2004-12-20 Thread Simon Urbanek
On Dec 20, 2004, at 10:20 AM, Marc Schwartz wrote: I was just curious if anyone from R Core might comment on the nature and scope of the cooperation, as I could not find anything at the Gnumeric web site on this. I don't know about that, either, but as of R and Gnumeric i know that Duncan was wor

[Rd] RE: [R] SAS or R software

2004-12-20 Thread Warnes, Gregory R
> -Original Message- > From: Frank E Harrell Jr [mailto:[EMAIL PROTECTED] ... > This is neat Greg. Just installed the latest gregmisc. Do you > automatically used fixed width fonts for this, for alignment > of columns? Unfortunately, I haven't found any way to select fixed-width fon

[Rd] R and Gnumeric?

2004-12-20 Thread Marc Schwartz
Hi all, A hopefully quick query. I was reading a posting over at gnomedesktop.org on the latest release of Gnumeric 1.4: http://gnomedesktop.org/node/2090 There is a mention there: Improved accuracy: While Gnumeric 1.2 was already the best available source for accuracy in statis

[Rd] RE: [BioC] limma, FDR, and p.adjust

2004-12-20 Thread Kimpel, Mark W
Marcus, Gordon, and R developers, Thanks to you both for kind and useful replies. Gordon you are correct, I did post this question once before but, as I approach publication of a rapid communication paper, wanted to make absolutely sure that I was correct in assuming that the p values of p.adjust

[Rd] [BioC] limma, FDR, and p.adjust

2004-12-20 Thread Gordon K Smyth
You asked the same question on the Bioconductor mailing list back in August. At that time, you suggested yourself a solution for how the adjusted p-values should be interpreted. I answered your query and told you that your interpretation was correct. So I'm not sure what more can be said, exc